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ASM1300092v1

Organism name:
Longimicrobium terrae (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CB-286315
BioSample:
SAMN14777635
BioProject:
PRJNA629516
Submitter:
Fundacion MEDINA
Date:
2020/05/09
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_013000925.1 (latest)
RefSeq assembly accession:
GCF_013000925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JABDTL01
Assembly method:
Geneious v. 9.1.2.
Expected final version:
yes
Genome coverage:
200.0x
Sequencing technology:
PacBio; Illumina

IDs: 7077671 [UID] 19467618 [GenBank] 19472838 [RefSeq]

See Genome Information for Longimicrobium terrae

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from CECT 8660T
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::05/01/2020 06:46:45
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::5,743
CDSs (total)::5,669
Genes (coding)::5,593
CDSs (with protein)::5,593
Genes (RNA)::74
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::60
ncRNAs::2
Pseudo Genes (total)::76
CDSs (without protein)::76
Pseudo Genes (ambiguous residues)::0 of 76
Pseudo Genes (frameshifted)::20 of 76
Pseudo Genes (incomplete)::55 of 76
Pseudo Genes (internal stop)::1 of 76
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,886,230
Total ungapped length6,886,230
Number of contigs4
Contig N503,950,089
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced6,886,23046,886,2303,950,08900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Longimicrobium terraeLongimicrobium terrae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_014198875.1Longimicrobium terraetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014198875.1Longimicrobium terraetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9998.3899.86
Best-match type99.9998.3899.86

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna