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ASM2048068v1

Organism name:
Deferrivibrio essentukiensis (bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Es71-Z0220
BioSample:
SAMN22063692
BioProject:
PRJNA768788
Submitter:
Research Center of Biotechnology RAS
Date:
2021/10/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_020480685.1 (latest)
RefSeq assembly accession:
GCF_020480685.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAJAFU01
Assembly method:
Unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
1207.0x
Sequencing technology:
Illumina MiSeq

IDs: 11187071 [UID] 29507078 [GenBank] 32517208 [RefSeq]

See Genome Information for Deferrivibrio essentukiensis

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Dr. Daria G. Zavarzina Winogradsky Institute of Microbiology, Federal Research Centre Fundamentals of Biotechnology, ... Russian Academy of Sciences, Prospekt 60 Letiya Oktyabrya 7, bld. 2, Moscow 117312, Russian Federation.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/08/2021 11:16:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,363
CDSs (total)::2,316
Genes (coding)::2,293
CDSs (with protein)::2,293
Genes (RNA)::47
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::40
ncRNAs::4
Pseudo Genes (total)::23
CDSs (without protein)::23
Pseudo Genes (ambiguous residues)::0 of 23
Pseudo Genes (frameshifted)::5 of 23
Pseudo Genes (incomplete)::19 of 23
Pseudo Genes (internal stop)::7 of 23
Pseudo Genes (multiple problems)::7 of 23
CRISPR Arrays::6
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,362,387
Total ungapped length2,362,387
Number of contigs65
Contig N5077,140
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)65

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,362,387652,362,38777,14000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Deferrivibrio essentukiensisDeferrivibrio essentukiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000827125.1Geoalkalibacter subterraneustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type93.180.770.49

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected