iqSchCanc2.1

Organism name:: Schistocerca cancellata (South American locust)
Infraspecific name:: Specimen-voucher: TAMUIC-IGC-003103
Isolate:: TAMUIC-IGC-003103
Sex:: female
BioSample:: SAMN18214789
BioProject:: PRJNA772266
Submitter:: Behavioral Plasticity Research Institute (BPRI)
Date:: 2022/06/28
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_023864275.2 (latest)
RefSeq assembly accession:: GCF_023864275.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: JAMRYG01
Assembly method:: HiFiASM v. 0.15.4; 3D-DNA v. 210817; Juicebox Assembly Tools v. 1.11
Expected final version:: yes
Genome coverage:: 30.0x
Sequencing technology:: PacBio Sequel; Illumina NovaSeq

IDs: 13199831 [UID] 34500848 [GenBank] 34606698 [RefSeq]

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_023864275.2	=	GCF_023864275.1	iqSchCanc2.1	Chromosome	Latest GenBank, Latest RefSeq
GCA_023864275.1	n/a	n/a	iqSchCanc2.1	Chromosome	Replaced GenBank

Total sequence length	8,536,893,415
Total ungapped length	8,536,695,967
Gaps between scaffolds	0
Number of scaffolds	1,108
Scaffold N50	939,673,033
Scaffold L50	4
Number of contigs	1,511
Contig N50	59,628,095
Contig L50	45
Total number of chromosomes and plasmids	13
Number of component sequences (WGS or clone)	1,108

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM043672.1	=	NC_064626.1	0
Chromosome 2	CM043673.1	=	NC_064627.1	0
Chromosome 3	CM043674.1	=	NC_064628.1	0
Chromosome 4	CM043675.1	=	NC_064629.1	0
Chromosome 5	CM043676.1	=	NC_064630.1	0
Chromosome 6	CM043677.1	=	NC_064631.1	0
Chromosome 7	CM043678.1	=	NC_064632.1	0
Chromosome 8	CM043679.1	=	NC_064633.1	0
Chromosome 9	CM043680.1	=	NC_064634.1	0
Chromosome 10	CM043681.1	=	NC_064635.1	0
Chromosome 11	CM043682.1	=	NC_064636.1	0
Chromosome 12	CM043683.1	=	NC_064637.1	0
unplaced	n/a	n/a	n/a	1,095

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	8,536,877,781	1,107	8,536,680,333	939,673,033	403
Chromosome 1	1,288,847,234	1	1,288,828,036	1,288,847,234	41
Chromosome 2	1,152,711,762	1	1,152,692,262	1,152,711,762	39
Chromosome 3	963,605,626	1	963,595,126	963,605,626	21
Chromosome 4	939,673,033	1	939,653,948	939,673,033	39
Chromosome 5	845,070,905	1	845,061,905	845,070,905	18
Chromosome 6	733,933,210	1	733,925,210	733,933,210	16
Chromosome 7	617,156,563	1	617,145,063	617,156,563	23
Chromosome 8	616,601,722	1	616,591,222	616,601,722	21
Chromosome 9	526,701,452	1	526,680,452	526,701,452	42
Chromosome 10	230,942,790	1	230,937,721	230,942,790	12
Chromosome 11	178,211,061	1	178,201,561	178,211,061	19
Chromosome 12	170,239,443	1	170,227,443	170,239,443	24
unplaced	273,182,980	1,095	273,140,384	5,246,594	88

Assembly Unit Name
Primary Assembly
non-nuclear