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bAmmNel1.pri

Organism name:
Ammospiza nelsoni (birds)
Infraspecific name:
Specimen-voucher: NESP 2821-27714
Isolate:
bAmmNel1
Sex:
female
BioSample:
SAMN28421656
BioProject:
PRJNA839456
Submitter:
Vertebrate Genomes Project
Date:
2023/01/09
Assembly type:
haploid (principal pseudohaplotype of diploid)
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_027579445.1 (latest)
RefSeq assembly accession:
GCF_027579445.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAQCNT01
Assembly method:
HiFiasm v. 0.15.4 + galaxy0; purge_dups v. 1.2.5 + galaxy3; Bionano Solve v. 3.6.1 + galaxy3; salsa v. 2.3 + galaxy2
Expected final version:
no
Genome coverage:
34.27x
Sequencing technology:
PacBio Sequel II HiFi; Bionano Genomics DLS; Arima Hi-C v2
Linked assembly:
GCA_027579665.1 (alternate pseudohaplotype of diploid)

IDs: 15255791 [UID] 39302118 [GenBank] 44997758 [RefSeq]

See Genome Information for Ammospiza nelsoni

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,185,463,352
Total ungapped length1,180,370,373
Gaps between scaffolds0
Number of scaffolds77
Scaffold N5074,723,840
Scaffold L506
Number of contigs292
Contig N5012,036,358
Contig L5027
Total number of chromosomes and plasmids37
Number of component sequences (WGS or clone)77

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_027579455.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM050581.1=NC_080633.10
Chromosome 2CM050582.1=NC_080634.10
Chromosome 3CM050583.1=NC_080635.10
Chromosome 4CM050584.1=NC_080636.10
Chromosome 5CM050585.1=NC_080637.10
Chromosome 6CM050586.1=NC_080638.10
Chromosome 7CM050587.1=NC_080639.10
Chromosome 8CM050588.1=NC_080640.10
Chromosome 9CM050589.1=NC_080641.10
Chromosome 10CM050590.1=NC_080642.10
Chromosome 11CM050591.1=NC_080643.10
Chromosome 12CM050592.1=NC_080644.10
Chromosome 13CM050593.1=NC_080645.10
Chromosome 14CM050594.1=NC_080646.10
Chromosome 15CM050595.1=NC_080647.10
Chromosome 16CM050596.1=NC_080648.10
Chromosome 17CM050597.1=NC_080649.10
Chromosome 18CM050598.1=NC_080650.10
Chromosome 19CM050599.1=NC_080651.10
Chromosome 20CM050600.1=NC_080652.10
Chromosome 21CM050601.1=NC_080653.10
Chromosome 22CM050602.1=NC_080654.10
Chromosome 23CM050603.1=NC_080655.10
Chromosome 24CM050604.1=NC_080656.10
Chromosome 25CM050605.1=NC_080657.10
Chromosome 26CM050606.1=NC_080658.10
Chromosome 27CM050607.1=NC_080659.10
Chromosome 28CM050608.1=NC_080660.10
Chromosome 29CM050609.1=NC_080661.10
Chromosome 30CM050610.1=NC_080662.10
Chromosome 31CM050611.1=NC_080663.10
Chromosome 32CM050612.1=NC_080664.10
Chromosome 33CM050613.1=NC_080665.10
Chromosome 34CM050614.1=NC_080666.10
Chromosome 35CM050615.1=NC_080667.10
Chromosome WCM050616.1=NC_080668.10
Chromosome ZCM050617.1=NC_080669.10
unplacedn/an/an/a40

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All1,185,463,352771,180,370,37374,723,8402150
Chromosome 1155,447,6191155,337,884155,447,619200
Chromosome 2120,722,1411120,602,427120,722,141180
Chromosome 3115,508,1481115,469,642115,508,148160
Chromosome 476,633,907176,626,43776,633,90760
Chromosome 574,723,840174,531,64074,723,84060
Chromosome 665,395,694165,345,45165,395,694110
Chromosome 740,159,020140,151,80040,159,02020
Chromosome 839,623,761139,617,41339,623,76150
Chromosome 936,565,514136,542,77936,565,51470
Chromosome 1027,615,464127,589,47427,615,46410
Chromosome 1122,630,956122,630,94322,630,95610
Chromosome 1222,262,677120,813,52822,262,67740
Chromosome 1321,551,278121,551,27821,551,27800
Chromosome 1421,049,297121,049,29721,049,29700
Chromosome 1520,566,687120,566,67420,566,68710
Chromosome 1619,511,261119,508,39319,511,26130
Chromosome 1718,006,652118,006,25218,006,65220
Chromosome 1814,921,164114,919,54414,921,16420
Chromosome 1912,555,122112,548,42212,555,12240
Chromosome 2012,239,593112,239,58012,239,59310
Chromosome 2112,036,358112,036,35812,036,35800
Chromosome 229,592,56319,586,5549,592,56320
Chromosome 238,416,86318,290,0088,416,86350
Chromosome 248,296,84418,296,8448,296,84400
Chromosome 257,670,67917,670,1797,670,67910
Chromosome 267,190,95617,190,8157,190,95610
Chromosome 276,772,28516,770,7396,772,28520
Chromosome 286,625,76016,625,2606,625,76010
Chromosome 295,159,36915,158,4695,159,36930
Chromosome 304,987,57214,983,3304,987,57230
Chromosome 314,462,88214,461,6824,462,88230
Chromosome 323,987,15513,986,0553,987,15540
Chromosome 333,511,11313,511,1133,511,11300
Chromosome 342,644,14912,643,1492,644,14920
Chromosome 352,575,05612,574,5562,575,05610
Chromosome W21,546,180119,899,76121,546,18050
Chromosome Z89,147,626188,203,73289,147,626570
unplaced43,150,1474042,832,9111,508,116150