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Source database (GenBank or RefSeq) File type

fConCon1.1

Organism name:

Conger conger (European conger)

BioSample:

SAMEA12219431

BioProject:

PRJEB66426

Submitter:

WELLCOME SANGER INSTITUTE

Date:

2023/09/29

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_963514075.1 (latest)

RefSeq assembly accession:

GCF_963514075.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in GenBank: chromosome MT

Data displayed for RefSeq version

WGS Project:

CAUPSU01

Assembly method:

various

Genome coverage:

36x

Sequencing technology:

PacBio,Arima2

Linked assembly:

GCA_963514125.1 (alternate pseudohaplotype of diploid)

IDs: 19674801 [UID] 49978988 [GenBank] 50481398 [RefSeq]

See Genome Information for Conger conger

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_963514075.1	≠	GCF_963514075.1	fConCon1.1	Chromosome	Latest GenBank, Latest RefSeq

Comment

The assembly fConCon1.1 is based on 36x PacBio data and Arima2 Hi-C data generated by the Darwin Tree of Life Project
(https://www.darwintreeoflife.org/). The assembly process included the following sequence of steps: initial PacBio assembly generation with Hifiasm, retained haplotig separation ... with purge_dups, and Hi-C based scaffolding with YaHS. The mitochondrial genome was assembled using MitoHiFi. Finally, the primary assembly was analysed and manually improved using rapid curation. Chromosome-scale scaffolds confirmed by the Hi-C data have been named in order of size.  more

Global statistics

Total sequence length	1,136,402,888
Total ungapped length	1,136,201,088
Gaps between scaffolds	0
Number of scaffolds	380
Scaffold N50	64,882,367
Scaffold L50	8
Number of contigs	1,389
Contig N50	3,090,688
Contig L50	105
Total number of chromosomes and plasmids	19
Number of component sequences (WGS or clone)	380

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OY741314.1	=	NC_083760.1	0
Chromosome 2	OY741315.1	=	NC_083761.1	0
Chromosome 3	OY741316.1	=	NC_083762.1	0
Chromosome 4	OY741317.1	=	NC_083763.1	0
Chromosome 5	OY741318.1	=	NC_083764.1	0
Chromosome 6	OY741319.1	=	NC_083765.1	0
Chromosome 7	OY741320.1	=	NC_083766.1	0
Chromosome 8	OY741321.1	=	NC_083767.1	0
Chromosome 9	OY741322.1	=	NC_083768.1	0
Chromosome 10	OY741323.1	=	NC_083769.1	0
Chromosome 11	OY741324.1	=	NC_083770.1	0
Chromosome 12	OY741325.1	=	NC_083771.1	0
Chromosome 13	OY741326.1	=	NC_083772.1	0
Chromosome 14	OY741327.1	=	NC_083773.1	0
Chromosome 15	OY741328.1	=	NC_083774.1	0
Chromosome 16	OY741329.1	=	NC_083775.1	0
Chromosome 17	OY741330.1	=	NC_083776.1	0
Chromosome 18	OY741331.1	=	NC_083777.1	0
Chromosome 19	OY741332.1	=	NC_083778.1	0
unplaced	n/a	n/a	n/a	361

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	1,136,402,888	380	1,136,201,088	64,882,367	1,009
Chromosome 1	96,783,005	1	96,761,405	96,783,005	108
Chromosome 2	89,852,544	1	89,837,144	89,852,544	77
Chromosome 3	83,289,512	1	83,271,512	83,289,512	90
Chromosome 4	79,473,888	1	79,457,288	79,473,888	83
Chromosome 5	68,367,648	1	68,352,848	68,367,648	74
Chromosome 6	65,237,770	1	65,230,770	65,237,770	35
Chromosome 7	65,176,275	1	65,163,875	65,176,275	62
Chromosome 8	64,882,367	1	64,873,567	64,882,367	44
Chromosome 9	61,472,027	1	61,459,027	61,472,027	65
Chromosome 10	54,225,905	1	54,215,305	54,225,905	53
Chromosome 11	51,853,002	1	51,845,002	51,853,002	40
Chromosome 12	50,018,547	1	50,011,747	50,018,547	34
Chromosome 13	48,903,957	1	48,898,757	48,903,957	26
Chromosome 14	47,674,658	1	47,667,858	47,674,658	34
Chromosome 15	42,405,856	1	42,397,456	42,405,856	42
Chromosome 16	41,910,209	1	41,904,009	41,910,209	31
Chromosome 17	40,826,945	1	40,820,945	40,826,945	30
Chromosome 18	33,251,940	1	33,246,740	33,251,940	26
Chromosome 19	23,410,519	1	23,402,119	23,410,519	42
unplaced	27,386,314	361	27,383,714	378,000	13

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fConCon1.1

See Genome Information for Conger conger

Pathogen Detection Resources

There are 3 assemblies for this organism

History (Show revision history)

Comment

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