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Taxonomy

Oryza sativa Japonica Group

Japanese rice (Oryza sativa japonica group) is a below-species classification of Asian cultivated rice (Oryza sativa)

Taxonomy ID: 39947

Genomes Genes Genome Data Viewer

Search results

Items: 20

  • Filters activated: Latest, Exclude anomalous. Clear all to show 22 items.
1.

IRGSP-1.0

Os-Nipponbare-Reference-IRGSP-1.0

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Nipponbare
Submitter:
National Institute of Agrobiological Sciences
Date:
2015/10/10
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_001433935.1 (latest)
RefSeq assembly accession:
GCF_001433935.1 (latest)
IDs:
578461 [UID] 2581368 [GenBank] 2881698 [RefSeq]

2.

ASM3414082v1

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Nipponbare
Submitter:
Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences
Date:
2023/12/06
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_034140825.1 (latest)
RefSeq assembly accession:
n/a
IDs:
19974251 [UID] 50661058 [GenBank]

3.

ASM2616768v1

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Changxianggeng 1813
Submitter:
Institute of Botany, Jiangsu Province and Chinese Academy of Sciences
Date:
2022/11/14
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_026167685.1 (latest)
RefSeq assembly accession:
n/a
IDs:
14401191 [UID] 37373828 [GenBank]

4.

AzucenaRS1

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Azucena
Submitter:
University of Arizona
Date:
2020/01/06
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009830595.1 (latest)
RefSeq assembly accession:
n/a
IDs:
5433851 [UID] 15732498 [GenBank]

5.

ASM386523v1

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Nipponbare
Submitter:
Chinese Academy of Agricultural Sciences
Date:
2018/12/06
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_003865235.1 (latest)
RefSeq assembly accession:
n/a
IDs:
2131941 [UID] 7992208 [GenBank]

6.

IGDBCAS_Zhonghua11_1.0

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Zhonghua 11
Submitter:
Institute of Genetics and Developmental Biology
Date:
2020/09/15
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_014526345.1 (latest)
RefSeq assembly accession:
n/a
IDs:
8063991 [UID] 22074448 [GenBank]

7.

Osativa_Kitaake_v2.0

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Kitaake
Submitter:
DOE Joint Genome Institute
Date:
2020/02/25
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009797565.1 (latest)
RefSeq assembly accession:
n/a
IDs:
6072511 [UID] 17262118 [GenBank]

8.

A123v1.0

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: A123
Submitter:
University of California, Riverside
Date:
2015/01/14
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000817635.1 (latest)
RefSeq assembly accession:
n/a
IDs:
242701 [UID] 1476728 [GenBank]

9.

HEG4v1.0

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: HEG4
Submitter:
University of California, Riverside
Date:
2015/01/14
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000817615.1 (latest)
RefSeq assembly accession:
n/a
IDs:
242691 [UID] 1476718 [GenBank]

10.

OrySat_Sep2003

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Nipponbare
Submitter:
Beijing Genomics Institute
Date:
2005/01/04
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000149285.1 (latest)
RefSeq assembly accession:
n/a
IDs:
172258 [UID] 172258 [GenBank]

11.

Osat_hitom_01

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Hitomebore
Submitter:
Iwate Biotechnology Research Center
Date:
2011/12/30
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000321445.1 (latest)
RefSeq assembly accession:
n/a
IDs:
508408 [UID] 508408 [GenBank]

12.

OrySat_Aug2009

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Koshihikari
Submitter:
QTL Genomics Research Center, National Institute of Agrobiological Sciences
Date:
2010/04/23
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000164945.1 (latest)
RefSeq assembly accession:
n/a
IDs:
309378 [UID] 309378 [GenBank]

13.

OS128077RS1

Organism:
Oryza sativa tropical japonica subgroup (Asian cultivated rice)
Infraspecific name:
Bio-material: IRRI:IRGC 19961-2
Submitter:
University of Arizona
Date:
2020/01/06
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009831275.1 (latest)
RefSeq assembly accession:
n/a
IDs:
5433801 [UID] 15732408 [GenBank]

14.

Os117425RS1

Organism:
Oryza sativa aromatic subgroup (Asian cultivated rice)
Infraspecific name:
Bio-material: IRRI:IRGC 12485-1
Submitter:
University of Arizona
Date:
2020/01/06
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009831255.1 (latest)
RefSeq assembly accession:
n/a
IDs:
5433821 [UID] 15732448 [GenBank]

15.

Os132278RS1

Organism:
Oryza sativa tropical japonica subgroup (Asian cultivated rice)
Infraspecific name:
Bio-material: IRRI:IRGC 80273-1
Submitter:
University of Arizona
Date:
2020/01/06
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_009831315.1 (latest)
RefSeq assembly accession:
n/a
IDs:
5433791 [UID] 15732388 [GenBank]

16.

KIT_r1.0.pmol

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Kitaake
Submitter:
Kazusa DNA Research Institute
Date:
2022/03/07
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_022834795.1 (latest)
RefSeq assembly accession:
n/a
IDs:
12455231 [UID] 32615188 [GenBank]

17.

Longgeng57_v1.0

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Early Geng
Submitter:
Institute of Crop Sciences/National Key Facility for Crop Gene Resources and Genetic Improvement, Ch
Date:
2023/12/12
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_034317485.1 (latest)
RefSeq assembly accession:
n/a
IDs:
20152821 [UID] 51035808 [GenBank]

18.

ASM344906v1

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Shennong 265
Submitter:
Shenyang Agricultural University
Date:
2018/09/04
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_003449065.1 (latest)
RefSeq assembly accession:
n/a
IDs:
1914931 [UID] 7275028 [GenBank]

19.

Build 4.0

The IRGSP pseudomolecules (Build 4.0)

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Nipponbare
Submitter:
International Rice Genome Sequencing Project
Date:
2009/08/07
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000005425.2 (latest)
RefSeq assembly accession:
GCF_000005425.2 (suppressed)
Excluded from RefSeq:
superseded by newer assembly for species
IDs:
313038 [UID] 313028 [GenBank] 313038 [RefSeq]

20.

ASM429570v1

Organism:
Oryza sativa Japonica Group (Japanese rice)
Infraspecific name:
Cultivar: Nipponbare
Submitter:
National Institute of Agrobiological Sciences, Rice Genome Research Program
Date:
2004/11/05
Assembly level:
Chromosome
Genome representation:
partial
GenBank assembly accession:
GCA_004295705.1 (latest)
RefSeq assembly accession:
n/a
Excluded from RefSeq:
partial
IDs:
2318081 [UID] 8644868 [GenBank]

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