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Genome Information for Spermophilus citellus
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This project collects the sequencing data and assemblies generated for Spermophilus citellus, common name European suslik, as part of the European Reference Genome Atlas Pilot Project (https://www.erga-biodiversity.eu/pilot-project). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/). The assembly is provided by the Wellcome Sanger Institute Tree of Life Programme (https://www.sanger.ac.uk/programme/tree-of-life/) in collaboration with Alexandros Triantafyllidis (Aristotle University of Thessaloniki, Greece), species ambassador for ERGA, and the European Reference Genome Atlas Pilot Project team.
| Accession | PRJEB73447 |
| Type | Umbrella project |
| Organism | Spermophilus citellus[Taxonomy ID: 9997] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Sciuromorpha; Sciuridae; Xerinae; Marmotini; Spermophilus; Spermophilus citellus |
| Submission | Registration date: 6-Mar-2024
WELLCOME SANGER INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 23 |
| WGS master | 2 |
| Genomic DNA | 21 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
mSpeCit encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB76892 | Chromosomes | Spermophilus citellus | Spermophilus citellus (European suslik) genome assembly, mSpeCit3 (WELLCOME SANGER INSTITUTE) | | PRJEB76893 | Contigs | Spermophilus citellus | Spermophilus citellus (European suslik) genome assembly, mSpeCit3, alternate haplotype (WELLCOME SANGER INSTITUTE) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJEB73446 | Spermophilus citellus | Spermophilus citellus (European suslik), genomic and transcriptomic data (WELLCOME SANGER INSTITUTE) |
|