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Genome Information for Esox lucius
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The Northern pike (Esox lucius), is found across the Canada and Northern Europe. They inhabit brackish and fresh waters. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, 10X Genomics libraries, Arima Genomics HiC, and Illumina short reads at the Max Planck Institute in Dresden led by Gene Myers group. Genome assembly was conducted by Martin Pippel, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Funding was raised by Gene Myers. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562208 |
| Type | Umbrella project |
| Organism | Esox lucius[Taxonomy ID: 8010] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Esociformes; Esocidae; Esox; Esox lucius |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 62973 |
| WGS master | 2 |
| Transcript | 62868 |
| SRA Experiments | 16 |
| Protein Sequences | 58098 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA561977 | Chromosomes | Esox lucius | Esox lucius (northern pike) genome, fEsoLuc1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561978 | Scaffolds | Esox lucius | Esox lucius (northern pike) genome, fEsoLuc1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA629749 | Chromosomes | Esox lucius | Esox lucius isolate:fEsoLuc1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008120 | SRA or Trace | Esox lucius (northern pike) genome, fEsoLuc1, sequence data. | Esox lucius (northern pike) genome, fEsoLuc1, sequence data. (G10K) |
|