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Genome Information for Trichosurus vulpecula
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The brushtail possum (Trichosurus vulpecula) is a noctural, semi-aboreal marsupial that is native to Australia. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with PacBio long reads, Bionano optical maps, and 10X Genomics linked reads at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing. Genome assembly was conducted by Maximillian Driller, and supervised by Arang Rhie, using the VGP 1.6 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate as contigs only. Genome coordination and funding was by Tim Hore and Neil Gemmell.
| Accession | PRJNA562248 |
| Type | Umbrella project |
| Organism | Trichosurus vulpecula[Taxonomy ID: 9337] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Diprotodontia; Phalangeridae; Trichosurus; Trichosurus vulpecula |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 37895 |
| WGS master | 2 |
| Transcript | 37661 |
| SRA Experiments | 37 |
| Protein Sequences | 35529 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace Total |
2
1
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA562013 | Scaffolds | Trichosurus vulpecula | Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA562014 | Chromosomes | Trichosurus vulpecula | Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, primary haplotype (Vertebrate Genomes Project) | | PRJNA667932 | Chromosomes | Trichosurus vulpecula | Trichosurus vulpecula isolate:mTriVul1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1008656 | SRA or Trace | Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, sequence data | Trichosurus vulpecula (Brushtail possum) genome, mTriVul1, sequence data (G10K) |
|