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Accession: PRJEB40772 ID: 669784

INSDC Non-Human Coronavirus Host Sequencing Data

This umbrella project groups all public non-human sequencing data from coronavirus infected hosts that is currently archived with the International Nucleotide Sequence Database Collaboration (INSDC).
AccessionPRJEB40772
TypeUmbrella project
SubmissionRegistration date: 19-Oct-2020
EMBL-EBI
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1021937
WGS master252
Genomic DNA795960
Genomic RNA185902
Transcript37290
SRA Experiments227722
Protein Sequences61943
Publications
PubMed168
PMC164
Other datasets
BioSample1071349
GEO DataSets193
Assembly39
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes61419
SRA Data Details
ParameterValue
Data volume, Gbases152,982
Data volume, Tbytes44.57
This project encompasses the following 352 sub-projects:
Project TypeNumber of Projects
Epigenomics2
BioProject
accession
OrganismTitle
PRJNA647390Chlorocebus sabaeusGenome-wide CRISPR screen reveals host genes that regulate SARS-CoV-2 infection (Yale University)
PRJNA647434Chlorocebus sabaeusGenome-wide CRISPR screen reveals host genes that regulate SARS-CoV-2 infection [ATAC-seq] (BML338, Pathology, Yale University)
Genome sequencing

1
5
3
72
15
96
BioProject
accession
Assembly
level
NameTitle
PRJNA681516 SRA or Trace16S rRNA Gene Sequencing of Rectal Swab in Patients Affected by COVID-1916S rRNA Gene Sequencing of Rectal Swab in Patients Affected by COVID-19 (INMI Lazzaro Spallanzani...)
PRJEB36487 No data links2019_nCoV data generated by BGI2019_nCoV coronavirus data set. Collection of new coronavirus samples and assembly sequences. Data first released by CNGBdb (https://db.cngb.org/search/project/CNP0000881) (Beijing Genome Institute)
PRJNA756264 SRA or TraceA cell-free nanobody engineering platform rapidly generates SARS-CoV-2 neutralizing nanobodiesA cell-free nanobody engineering platform rapidly generates SARS-CoV-2 neutralizing nanobodies (Broad Institute)
PRJNA838638 SRA or TraceA comparative study of RNA yields from museum specimens, including an optimized protocol for extracting RNA from formalin-fixed specimensA comparative study of RNA yields from museum specimens, including an optimized protocol for extracting RNA from formalin-fixed specimens (American Museum of Natural...)
PRJNA638938 SRA or TraceA comprehensive benchmarking study of SARS-CoV-2 whole-genome sequencing using multiple library construction protocols and patient samplesA comprehensive benchmarking study of SARS-CoV-2 whole-genome sequencing using multiple library construction protocols and patient samples (Loma Linda University)
List all 96 'Genome sequencing' projects...
Other101
BioProject
accession
NameTitle
PRJNA671680A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [PoC cohort]A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [PoC cohort] (Lunenfeld Tanenbaum Research...)
PRJNA671693A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [extended cohort]A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [extended cohort] (Lunenfeld Tanenbaum Research...)
PRJNA671689A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [pilot cohort]A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [pilot cohort] (Lunenfeld Tanenbaum Research...)
PRJNA671682A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [test cohort]A Multiplexed, Next-Generation Sequencing Platform for High-Throughput Detection of SARS-CoV-2 [test cohort] (Lunenfeld Tanenbaum Research...)
PRJNA661467A high-resolution temporal atlas of the SARS-CoV-2 translatome and transcriptomeA high-resolution temporal atlas of the SARS-CoV-2 translatome and transcriptome (The Baek Research Group of...)
List all 101 'Other' projects...
Transcriptome or Gene expression151
BioProject
accession
NameTitle
PRJNA667083A customizable purification assay designed for small-RNA biomarker identification and functional evaluation of circulating exosomes: Exosome Capture by AnTibody of CHoice and Enzymatic Release (exo-CATCHER)A customizable purification assay designed for small-RNA biomarker identification and functional evaluation of circulating exosomes: Exosome Capture by AnTibody of CHoice and Enzymatic Release (exo-CATCHER) (Laboratory of Medical Transcriptomics,...)
PRJNA720637A human-airway-on-a-chip for the rapid identification of candidate antiviral therapeutics and prophylacticsA human-airway-on-a-chip for the rapid identification of candidate antiviral therapeutics and prophylactics (tenOever Lab, Microbiology,...)
PRJNA732706Acinetobacter baumanniiRNAseq transcriptome analysis of A. baumannnii MS14413 treated with PBT2, zinc and tetracycline (School of Chemistry and Molecular...)
PRJNA664767Alarmin S100A8/A9 mediates activation of aberrant neutrophils in the pathogenesis of COVID-19Alarmin S100A8/A9 mediates activation of aberrant neutrophils in the pathogenesis of COVID-19 (You Lab, Institute of Systems...)
PRJNA673899Analysis on Replication and Transcription of SARS-CoV-2 and inhition effect of RemdesivirAnalysis on Replication and Transcription of SARS-CoV-2 and inhition effect of Remdesivir (BIology, Southern University...)
List all 151 'Transcriptome or Gene expression' projects...
metagenome2
BioProject
accession
NameTitle
PRJNA666241Nyctereutes procyonoidesNyctereutes procyonoides Metagenome (Jiangsu University)
PRJNA693784human metagenomelung microbiota of patients S.aureus infection and COVID-19 (Fondazione Policlinico Gemelli,...)

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