ID 706690 - BioProject

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Accession: PRJNA706690 ID: 706690

CanSeq150 Project: Genome Data and Assemblies

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This project is a component of the Earth BioGenome Project (EBP)

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40 additional projects are components of the Earth BioGenome Project (EBP).

The CanSeq150 Project (http://www.cgen.ca/canseq150) aims to generate high-quality genomic data and genome assemblies for the 150 species of eukaryotic organisms found in Canada. The CanSeq150 project will provide 150 publicly available new reference genomes to support sequence-based genomics research, especially in biodiversity, conservation and technology development. The CanSeq150 project is CGEn’s flagship Biodiversity project with three regional nodes in Toronto, ON, Canada (Hospital for Sick Children: https://www.sickkids.ca), Montreal, Quebec, Canada (McGill University: https://www.mcgill.ca) and Vancouver, BC, Canada (The University of British Columbia (UBC): https://www.ubc.ca, Canada's Michael Smith Genome Sciences Centre (GSC) at BC Cancer: https://www. More...

Accession	PRJNA706690
Type	Umbrella project
Submission	Registration date: 4-Mar-2021 CGEN - GSC CanSeq
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	267785
WGS master	33
Genomic DNA	4
Transcript	61631
SRA Experiments	1672
Protein Sequences	54695
Publications
PubMed	7
PMC	3
Other datasets
BioSample	1657
Assembly	33

SRA Data Details

Parameter	Value
Data volume, Gbases	8,962
Data volume, Tbytes	4.16

This project encompasses the following 48 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Chromosomes
Scaffolds
Contigs
SRA or Trace
No data links
Total

5
26
2
12
2
47

BioProject accession	Assembly level	Name	Title
PRJNA1068070	SRA or Trace	Acer saccharum	Acer saccharum (Universite du Quebec en Outaouais)
PRJNA526240	Scaffolds	Alces alces	Moose (Alces alces) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA496475	Scaffolds	Anarrhichthys ocellatus	Wolf eel (Anarrhichthys ocellatus) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA526246	Scaffolds	Antilocapra americana	Pronghorn (Antilocapra americana) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA588562	SRA or Trace	Aplodontia rufa olympica	Mountain beaver (Aplodontia rufa olympica) genome sequencing and assembly (Canada's Genomic Enterprise)

List all 47 'Genome sequencing' projects...

BioProject accession	Assembly level	Name	Title
PRJNA1068070	SRA or Trace	Acer saccharum	Acer saccharum (Universite du Quebec en Outaouais)
PRJNA526240	Scaffolds	Alces alces	Moose (Alces alces) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA496475	Scaffolds	Anarrhichthys ocellatus	Wolf eel (Anarrhichthys ocellatus) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA526246	Scaffolds	Antilocapra americana	Pronghorn (Antilocapra americana) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA588562	SRA or Trace	Aplodontia rufa olympica	Mountain beaver (Aplodontia rufa olympica) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA971647	SRA or Trace	Atlantic whitefish (Coregonus huntsmani)	Atlantic whitefish (Coregonus huntsmani) (McGill University)
PRJNA612047	SRA or Trace	Bison bison athabascae	Bison bison athabascae Genome sequencing (The Hospital for Sick Children)
PRJNA524684	Scaffolds	Branta canadensis	Canada Goose (Branta canadensis) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA666618	Scaffolds	Bubo scandiacus	Snowy Owl (Bubo scandiacus) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA666735	Contigs	Butorides virescens	Genome sequencing and assembly of Green Heron (Butorides virescens) (Canada's Genomic Enterprise)
PRJNA475116	Scaffolds	Callorhinus ursinus	Northern fur seal (Callorhinus ursinus) genome sequencing and assembly (Canada's Genomics Enterprise)
PRJNA826225	Chromosomes	Caretta caretta	Loggerhead Sea Turtle (Caretta caretta) genome sequencing and assembly (Canada's Genomic Enterprise), rCarCar2 (Canada's Genomic Enterprise)
PRJNA853764	Chromosomes	Caretta caretta	Loggerhead Sea Turtle (Caretta caretta) genome sequencing and assembly (Canada's Genomic Enterprise) (NCBI)
PRJNA688905	Chromosomes	Coelopa frigida	Coelopa frigida isolate:SI0201 Genome sequencing and assembly (Universite Laval)
PRJNA528992	Scaffolds	Dermochelys coriacea	Leatherback sea turtle (Dermochelys coriacea) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA922980	SRA or Trace	Doris montereyensis	Doris montereyensis (Monterey sea lemon) genome sequencing and assembly, xgDorMont1 (Canada's Genomic Enterprise)
PRJNA523436	Scaffolds	Erethizon dorsatum	North American porcupine (Erethizon dorsatum) Genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA475770	Scaffolds	Eumetopias jubatus	Steller sea lion (Eumetopias jubatus) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA525909	Scaffolds	Globicephala melas	Long-finned pilot whale (Globicephala melas) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA755823	SRA or Trace	Icteria virens	Icteria virens isolate:B017810 Genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA475306	Scaffolds	Lagenorhynchus obliquidens	Pacific white-sided dolphin (Lagenorhynchus obliquidens) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA689789	SRA or Trace	Linkage map Coelopa frigida (american population) GBS	Linkage map Coelopa frigida (american population) GBS (Universite Laval)
PRJNA578111	Scaffolds	Lontra canadensis	North American river otter (Lontra canadensis) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA491472	Scaffolds	Marmota flaviventris	Yellow bellied marmot (Marmota flaviventris) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA476112	Scaffolds	Marmota vancouverensis	Vancouver Island marmot (Marmota vancouverensis) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA1047157	SRA or Trace	Neogale vison	Development of chromosome level genome assembly for American mink (The Hospital for Sick Children)
PRJNA476345	Scaffolds	Odocoileus hemionus sitkensis	Sitka deer (Odocoileus hemionus sitkensis) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA496476	Scaffolds	Ophiodon elongatus	Ling cod (Ophiodon elongatus) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA492798	Scaffolds	Pandalus platyceros	Spot prawn (Pandalus platyceros) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA638629	Contigs	Perca flavescens	Perca flavescens Genome sequencing and assembly (Yellow Perch) (McGill University)
PRJNA638626	Scaffolds	Percina caprodes	Percina caprodes Genome sequencing and assembly (Log Perch) (McGill University)
PRJNA494181	Scaffolds	Phoca vitulina	Harbor seal (Phoca vitulina) genome sequencing and assembly (Canada's Genome Enterprise...)
PRJNA610902	Scaffolds	Picea mariana	Picea mariana isolate:40-10-1 Genome sequencing and assembly (BC Cancer Agency GSC)
PRJNA588625	Scaffolds	Pissodes strobi	White pine weevil (Pissodes strobi) and associated symbionts (Canada's Genomic Enterprise)
PRJNA514809	Scaffolds	Popillia japonica	Japanese beetle (Popillia japonica) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA689963	SRA or Trace	Population genomics American population Coelopa frigida	Population genomics American population Coelopa frigida (Universite Laval)
PRJNA842256	SRA or Trace	Poweshiek Skipperling (Oarisma poweshiek) Genome Sequencing and Assembly	Poweshiek Skipperling (Oarisma poweshiek) Genome Sequencing and Assembly (Assiniboine Park Zoo)
PRJNA499109	Chromosomes	Reinhardtius hippoglossoides	Reinhardtius hippoglossoides Genome sequencing and assembly (McGill University)
PRJNA682269	Chromosomes	Salvelinus namaycush	Salvelinus namaycush isolate:Seneca Genome sequencing and assembly (Universite Laval)
PRJNA588076	Scaffolds	Sapajus apella	Tufted capuchin monkey (Sapajus apella) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA674327	No data links	Sebastes caurinus	Copper Rockfish (Sebastes caurinus) Genome sequencing and assembly (Canada's Genomics Enterprise)
PRJNA674328	No data links	Sebastes maliger	Quillback Rockfish (Sebastes maliger) Genome sequencing and assembly (Canada's Genomics Enterprise)
PRJNA930705	SRA or Trace	Sistrurus catenatus	Sistrurus catenatus (eastern massasauga rattlesnake) genomic and transcriptomic data (Canada's Genomic Enterprise)
PRJNA560402	Scaffolds	Squalus suckleyi	Pacific spiny dogfish (Squalus suckleyi) genome sequencing and assembly, sSquSuc1 (Canada's Genomic Enterprise) (Canada's Genomic Enterprise)
PRJNA478572	Scaffolds	Taxidea taxus jeffersonii	American badger (Taxidea taxus) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA600983	SRA or Trace	Ullucus tuberosus	Ulluco (Ullucus tuberosus Caldas) genome sequencing and assembly (Canada's Genomic Enterprise)
PRJNA487641	Scaffolds	Ursus arctos horribilis	North American brown bear (Ursus arctos horribilis) genome sequencing and assembly (Canada's Genomic Enterprise)

Less...

Umbrella project

BioProject accession	Organism	Title
PRJNA689308	Cardellina canadensis	Cardellina canadensis (Canada warbler), bCarCan1 (CGEN - Canada's Genomics...)

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