Vibrio cholerae (ID 73589) - BioProject

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Accession: PRJNA73589 ID: 73589

Vibrio cholerae

Vibrio cholerae multi-isolate

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769 additional projects are related by organism.

Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa. This project includes the complete genome sequence (both chromosomes) of a single isolate (2010EL-1786) as well as WGS shotgun data (assembled contigs) from an additional 22 isolates. The Vibrio cholerae 2010EL-1786 clinical isolate is from Haiti - October 2010.

Accession	PRJNA73589
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Vibrio cholerae[Taxonomy ID: 666] Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae
Publications	Reimer AR et al., "Comparative genomics of Vibrio cholerae from Haiti, Asia, and Africa.", Emerg Infect Dis, 2011 Nov;17(11):2113-21 Published online, DOI: title: Comparative Genomics of Vibrio cholerae from Haiti, Asia, and Africa; journal: Emerging infectious diseases; year: 2011; volume: 17; issue: 11; author: Aleisha R Reimer
Submission	Registration date: 12-Dec-2011 Public Health Agency of Canada
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1787
WGS master	20
Publications
PubMed	1
PMC	1
Other datasets
BioSample	21
Assembly	20

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

20
20

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_000237785.2	AHGQ00000000	SAMN00765528	C6706	Vibrio cholerae O1 str. C6706
GCA_000237745.2	AHGO00000000	SAMN00765525	3569-08	Vibrio cholerae O1 str. 3569-08
GCA_000237725.2	AHGN00000000	SAMN00765524	3554-08	Vibrio cholerae O1 str. 3554-08
GCA_000237705.2	AHGM00000000	SAMN00765523	3546-06	Vibrio cholerae O1 str. 3546-06
GCA_000237685.2	AHGL00000000	SAMN00765522	3500-05	Vibrio cholerae O1 str. 3500-05
GCA_000237665.2	AHGK00000000	SAMN00765521	2011V-1021	Vibrio cholerae O1 str. 2011V-1021
GCA_000237645.2	AHGJ00000000	SAMN00765520	2011EL-1137	Vibrio cholerae O1 str. 2011EL-1137
GCA_000237625.2	AHGI00000000	SAMN00765519	2011EL-1133	Vibrio cholerae O1 str. 2011EL-1133
GCA_000237605.2	AHGH00000000	SAMN00765518	2011EL-1089	Vibrio cholerae O1 str. 2011EL-1089
GCA_000237585.2	AHGG00000000	SAMN00765517	2010V-1014	Vibrio cholerae O1 str. 2010V-1014
GCA_000237565.2	AHGF00000000	SAMN00765536	2010EL-2010N	Vibrio cholerae O1 str. 2010EL-2010N
GCA_000237545.2	AHGE00000000	SAMN00765535	2010EL-2010H	Vibrio cholerae O1 str. 2010EL-2010H
GCA_000237525.2	AHGD00000000	SAMN00765534	2010EL-1961	Vibrio cholerae O1 str. 2010EL-1961
GCA_000237505.2	AHGC00000000	SAMN00765533	2010EL-1749	Vibrio cholerae O1 str. 2010EL-1749
GCA_000237485.2	AHGB00000000	SAMN00765532	2009V-1131	Vibrio cholerae O1 str. 2009V-1131
GCA_000237465.2	AHGA00000000	SAMN00765531	2009V-1116	Vibrio cholerae O1 str. 2009V-1116
GCA_000237445.2	AHFZ00000000	SAMN00765530	2009V-1096	Vibrio cholerae O1 str. 2009V-1096
GCA_000237425.2	AHFY00000000	SAMN00765527	2009V-1085	Vibrio cholerae O1 str. 2009V-1085
GCA_000237405.2	AHFX00000000	SAMN00765516	2009V-1046	Vibrio cholerae O1 str. 2009V-1046
GCA_000237765.2	AHGP00000000	SAMN00765526	3582-05	Vibrio cholerae O1 str. 3582-05

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Vibrio cholerae

Vibrio cholerae multi-isolate

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