See
Genome Information for Lagopus muta
Navigate Up
Navigate Across
The Rock ptarmigan is a bird species belonging to the Phasianidae family. The species has a circumpolar distribution inhabiting sub-arctic and arctic regions in addition to a few more southern alpine regions. This sample is being included in the Vertebrate Genomes Project. The sample was collected by Kristinn P. Magnusson who also provided the finances for the project through his Icelandic Research Fund grant 206529-052, together with Jacob Hoglund with grant VR 2018-04635. The genome was assembled and scaffolded by Patrik Rodin-Morch with support from Ignas Bunikis and Giulio Formenti. Curation was performed by Alan Tracey at the Welcome Sanger Institute.
| Accession | PRJNA843060 |
| Type | Umbrella project |
| Organism | Lagopus muta[Taxonomy ID: 64668] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus; Lagopus muta |
| Submission | Registration date: 27-May-2022
Vertebrate Genomes Project |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 51865 |
| WGS master | 2 |
| Transcript | 51619 |
| Protein Sequences | 43785 |
| Publications |
| PubMed | 2 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA836583 | Chromosomes | Lagopus muta | Lagopus muta (Rock ptarmigan) genome, bLagMut1, primary haplotype (Vertebrate Genomes Project) | | PRJNA836585 | Scaffolds | Lagopus muta | Lagopus muta (Rock ptarmigan) genome, bLagMut1, alternate haplotype (Vertebrate Genomes Project) |
|
RefSeq assemblyHighest level of assembly : Chromosomes |
1
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA853367 | Chromosomes | Lagopus muta | Lagopus muta isolate:bLagMut1 RefSeq Assembly (NCBI) |
|