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Accession: PRJNA915404 ID: 915404

Pangasianodon hypophthalmus (striped catfish) genome, fPanHyp1

See Genome Information for Pangasianodon hypophthalmus
The striped catfish (Pangasianodon hypophthalmus) is a species of shark catfish (family Pangasiidae) native to the rivers of Southeast Asia. It has some morphological features that make it look like a shark. It is heavily cultivated as a food source, and endangered of extinction in the wild. This genome is from an animal collected by Joost Woltering and Axel Meyer from a fish market in Frankfurt, Germany, and likely from a breeding agriculture source. The sample was used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing was conducted at the the Max Planck Dresden Genome Center in Germany, conducted and coordinated by Gene Myers, Sylke Winkler, and Thomas Brown.
AccessionPRJNA915404
TypeUmbrella project
OrganismPangasianodon hypophthalmus[Taxonomy ID: 310915]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Siluriformes; Pangasiidae; Pangasianodon; Pangasianodon hypophthalmus
SubmissionRegistration date: 23-Dec-2022
Vertebrate Genomes Project
RelevanceReference genome
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)53980
WGS master2
Transcript53859
SRA Experiments3
Protein Sequences47335
Publications
PubMed1
PMC1
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases435
Data volume, Tbytes0.12
This project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Chromosomes
Scaffolds
SRA or Trace
Total

2
1
1
4
BioProject
accession
Assembly
level
NameTitle
PRJNA914796 ChromosomesPangasianodon hypophthalmusPangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, primary haplotype (Vertebrate Genomes Project)
PRJNA914798 ScaffoldsPangasianodon hypophthalmusPangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, alternate haplotype (Vertebrate Genomes Project)
PRJNA926961 ChromosomesPangasianodon hypophthalmusPangasianodon hypophthalmus (striped catfish) fPanHyp1, primary haplotype, RefSeq BioProject (NCBI)
PRJNA1008549 SRA or TracePangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, sequence data.Pangasianodon hypophthalmus (striped catfish) genome, fPanHyp1, sequence data. (G10K)

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