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Genome Information for Trifolium dubium
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This project collects the sequencing data and assemblies generated for Trifolium dubium as part of the European Reference Genome Atlas Pilot Project (https://www.erga-biodiversity.eu/pilot-project) and the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/). The assembly is provided by the Wellcome Sanger Institute Tree of Life Programme (https://www.sanger.ac.uk/programme/tree-of-life/) in collaboration with Ann Mc Cartney (University of California Santa Cruz, species ambassador ERGA) and the European Reference Genome Atlas Pilot Project team.
| Accession | PRJEB59394 |
| Type | Umbrella project |
| Organism | Trifolium dubium[Taxonomy ID: 97021] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; Hologalegina; IRL clade; Trifolieae; Trifolium; Trifolium dubium |
| Submission | Registration date: 31-Jan-2023
WELLCOME SANGER INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 20 |
| WGS master | 2 |
| Genomic DNA | 18 |
| SRA Experiments | 3 |
| Other datasets |
| BioSample | 4 |
| Assembly | 2 |
drTriDubi encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Contigs Total |
1
1
2
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB62713 | Chromosomes | Trifolium dubium | Trifolium dubium genome assembly, drTriDubi3 (WELLCOME SANGER INSTITUTE) | | PRJEB62712 | Contigs | Trifolium dubium | Trifolium dubium genome assembly, drTriDubi3, alternate haplotype (WELLCOME SANGER INSTITUTE) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJEB59393 | Trifolium dubium | Trifolium dubium, genomic and transcriptomic data (WELLCOME SANGER INSTITUTE) |
|