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Accession: PRJNA930872 ID: 930872

Pan troglodytes Umbrella project

See Genome Information for Pan troglodytes
This is the Pan troglodytes sample AG18354 (ToLID: mPanTro3). This includes autosomes from one pseudohaplotype, chrX, chrY, MT, and unplaced sequences not assigned to a pseudohaplotype. This assembly was generated with Verkko using PacBio Hifi and ONT UL data. Graph phasing to inform path selection was done using Hi-C information.
AccessionPRJNA930872
TypeUmbrella project
OrganismPan troglodytes[Taxonomy ID: 9598]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan; Pan troglodytes
SubmissionRegistration date: 2-Feb-2023
National Human Genome Research Institute, National Institutes of Health
RelevanceEvolution
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)131643
WGS master2
Transcript131543
SRA Experiments21
Protein Sequences109298
Publications
PubMed5
PMC3
Other datasets
BioSample1
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases2,310
Data volume, Tbytes0.94
This project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Complete genome
SRA or Trace
Total

3
1
4
BioProject
accession
Assembly
level
OrganismTitle
PRJNA916736 Complete genomePan troglodytesPan troglodytes Genome sequencing and assembly (National Human Genome Research...)
PRJNA916737 Complete genomePan troglodytesPan troglodytes Genome sequencing and assembly (National Human Genome Research...)
PRJNA945513 Complete genomePan troglodytesPan troglodytes RefSeq Genome sequencing (NCBI)
PRJNA976701 SRA or TracePan troglodytesPan troglodytes isolate:AG18354 Raw sequence reads (National Human Genome Research...)

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