A diverse set of Saccharomyces cerevisiae strains were selected based on unique features such as phylogenetic position, heterozygosity, ploidy etc and sequenced both with Nanopore and Illumina technology in order to generate accurate de-novo assemblies for each strain.
| Accession | PRJEB59869 |
| Type | Umbrella project |
| Submission | Registration date: 15-Feb-2023
ibps sorbonne universite |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 11059 |
| WGS master | 269 |
| Genomic DNA | 228 |
| SRA Experiments | 288 |
| Protein Sequences | 1788587 |
| Other datasets |
| BioSample | 118 |
| Assembly | 269 |
This project encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Scaffolds Contigs Total |
3
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJEB59231 | Scaffolds | Saccharomyces cerevisiae reference assembly panel (ScRAP). Phased genomes; haplotype 2. | Nanopore and illumina read sequencing of a diverse set of Saccharomyces cerevisiae strains for de-novo assemblies. Phased genomes; haplotype 2. (ibps sorbonne universite) | | PRJEB59232 | Contigs | Saccharomyces cerevisiae reference assembly panel (ScRAP). Phased genomes; polyploid. | Nanopore and illumina read sequencing of a diverse set of Saccharomyces cerevisiae strains for de-novo assemblies. Phased genomes; polyploid. (ibps sorbonne universite) | | PRJEB50706 | Scaffolds | Saccharomyces cerevisiae reference assembly panel (ScRAP). Raw sequencing data | Nanopore and illumina read sequencing of a diverse set of Saccharomyces cerevisiae strains for de-novo assemblies. Raw sequencing data (ibps sorbonne universite) | | PRJEB59413 | Scaffolds | Saccharomyces cerevisiae reference assembly panel (ScRAP). Unphased nuclear assemblies. | Nanopore and illumina read sequencing of a diverse set of Saccharomyces cerevisiae strains for de-novo assemblies. Unphased nuclear assemblies. (ibps sorbonne universite) |
|
| Other | 1 |
BioProject
accession | Name | Title |
|---|
| PRJEB59230 | Saccharomyces cerevisiae reference assembly panel (ScRAP). Mitochondrial genomes. | Nanopore and illumina read sequencing of a diverse set of Saccharomyces cerevisiae strains for de-novo assemblies. Mitochondrial genomes. (ibps sorbonne universite) |
|