See
Genome Information for Ochotona princeps
Navigate Up
Navigate Across
The American pika (Ochotona princeps), a diurnal species of pika, found in the mountains of western North America. They are relatives of rabbits and hares. Pikas are vocal, using both calls and songs to warn when predators are nearby and during the breeding season (modified from Wikipedia entry). This sample is from a male in Grand Mesa, Colorado, USA, collected and procured by John R. Demboski, Andrea Marie Carrillo, and Andrew Doll, and curated at the Denver Zoology Tissue Mammal collection. The sample was used to generate a high-quality reference genome for the Vertebrate Genomes Project (VGP). Sequencing and genome assembly were conducted at the Vertebrate Genomes Lab (VGL) at the Rockefeller University, led by Olivier Fedrigo and Erich D. Jarvis.
| Accession | PRJNA988022 |
| Type | Umbrella project |
| Organism | Ochotona princeps[Taxonomy ID: 9978] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Lagomorpha; Ochotonidae; Ochotona; Ochotona princeps |
| Submission | Registration date: 27-Jun-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 50962 |
| WGS master | 2 |
| Transcript | 44992 |
| SRA Experiments | 24 |
| Protein Sequences | 40014 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes SRA or Trace Total |
3
1
4
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA986273 | Chromosomes | Ochotona princeps | Ochotona princeps (southern American pika) reference genome, mOchPri1, hap1 (Vertebrate Genomes Project) | | PRJNA986274 | Chromosomes | Ochotona princeps | Ochotona princeps (southern American pika) reference genome, mOchPri1, hap2 (Vertebrate Genomes Project) | | PRJNA999375 | Chromosomes | Ochotona princeps | Ochotona princeps isolate:mOchPri1 RefSeq Genome sequencing and assembly (NCBI) | | PRJNA1149789 | SRA or Trace | Ochotona princeps (southern American pika) genome, mOchPri1, sequence data | Ochotona princeps (southern American pika) genome, mOchPri1, sequence data (Vertebrate Genomes Project) |
|