Saccharomycotina (ID 429441) - BioProject

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Accession: PRJNA429441 ID: 429441

Saccharomycotina (true yeasts)

Sequencing of 196 yeast species from the subphylum Saccharomycotina Genome sequencing and assembly

Accession	PRJNA429441
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Saccharomycotina[Taxonomy ID: 147537] Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina
Publications (total 3) Less...	Opulente DA et al., "Genomic and ecological factors shaping specialism and generalism across an entire subphylum.", bioRxiv, 2023 Sep 8; More... Opulente DA et al., "Genomic and ecological factors shaping specialism and generalism across an entire subphylum.", bioRxiv, 2023 Sep 8; Krause DJ et al., "Functional and evolutionary characterization of a secondary metabolite gene cluster in budding yeasts.", Proc Natl Acad Sci U S A, 2018 Oct 23;115(43):11030-11035 Shen XX et al., "Tempo and Mode of Genome Evolution in the Budding Yeast Subphylum.", Cell, 2018 Nov 29;175(6):1533-1545.e20 Less...
Submission	Registration date: 22-Oct-2018 UW-Madison
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	171
SRA Experiments	196
Publications
PubMed	3
PMC	3
Other datasets
BioSample	196
Assembly	171

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

150
21
171

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003707435.1	PPJB00000000	SAMN08343410	NRRL YB-4298	Aciculoconidium aculeatum
GCA_003705185.2	PPHU00000000	SAMN08343443	NRRL Y-7524	Ambrosiozyma ambrosiae
GCA_003706635.2	PPLV00000000	SAMN08343338	NRRL Y-63635	Ambrosiozyma maleeae (nom. inval.)
GCA_003706315.3	PPKY00000000	SAMN08343361	NRRL Y-6106	Ambrosiozyma oregonensis (nom. inval.)
GCA_003707675.3	PPKZ00000000	SAMN08343360	NRRL Y-7523	Ambrosiozyma philentoma
GCA_003707895.3	PPLW00000000	SAMN08343337	NRRL Y-63632	Ambrosiozyma pseudovanderkliftii
GCA_003705225.2	PPHW00000000	SAMN08343441	NRRL Y-63633	Ambrosiozyma vanderkliftii
GCA_003706655.3	PPLX00000000	SAMN08343336	NRRL Y-17395	Barnettozyma californica
GCA_003706665.2	PPLY00000000	SAMN08343335	NRRL Y-27270	Barnettozyma hawaiiensis
GCA_003707865.2	PPMA00000000	SAMN08343333	NRRL Y-12696	Barnettozyma pratensis
GCA_003707885.2	PPMB00000000	SAMN08343332	NRRL Y-6780	Barnettozyma salicaria
GCA_003705795.3	PPJN00000000	SAMN08343398	NRRL Y-6844	Blastobotrys americana
GCA_003705765.3	PPJM00000000	SAMN08343399	NRRL Y-27120	Blastobotrys mokoenaii
GCA_003705745.3	PPJL00000000	SAMN08343400	NRRL Y-7993	Blastobotrys muscicola
GCA_003707525.2	PPJK00000000	SAMN08343401	NRRL Y-17581	Blastobotrys niveus
GCA_003705735.3	PPJJ00000000	SAMN08343402	NRRL YB-2290	Blastobotrys peoriensis
GCA_003707485.3	PPJI00000000	SAMN08343403	NRRL Y-17577	Blastobotrys proliferans
GCA_003705705.2	PPJH00000000	SAMN08343404	NRRL Y-27150	Blastobotrys raffinosifermentans
GCA_003705695.2	PPJG00000000	SAMN08343405	NRRL Y-48249	Blastobotrys serpentis
GCA_003707445.1	PPJC00000000	SAMN08343409	NRRL Y-17705	Botryozyma nematodophila
GCA_003705215.3	PPHY00000000	SAMN08343439	NRRL Y-6653	Brettanomyces custersianus
GCA_003706475.3	PPLL00000000	SAMN08343348	NRRL Y-27910	Candida corydali
GCA_003708405.2	PPOB00000000	SAMN08343277	NRRL Y-48716	Candidozyma heveicola
GCA_003706495.1	PPLM00000000	SAMN08343347	NRRL Y-7343	Cephaloascus albidus
GCA_003707825.3	PPLN00000000	SAMN08343346	NRRL Y-6742	Cephaloascus fragrans
GCA_003706345.1	PPLA00000000	SAMN08343359	NRRL Y-11581	Citeromyces hawaiiensis
GCA_003705165.1	PPHV00000000	SAMN08343442	NRRL Y-2407	Citeromyces matritensis
GCA_003706365.1	PPLB00000000	SAMN08343358	NRRL Y-27975	Citeromyces siamensis
GCA_003707795.2	PPLK00000000	SAMN08343349	NRRL Y-17072	Clavispora fructus
GCA_003707745.2	PPLI00000000	SAMN08343351	NRRL Y-17389	Cyberlindnera misumaiensis
GCA_003706445.3	PPLH00000000	SAMN08343352	NRRL Y-1364	Cyberlindnera mrakii
GCA_003706915.2	PPMR00000000	SAMN08343315	NRRL YB-3808	Cyberlindnera petersonii
GCA_003707785.3	PPLJ00000000	SAMN08343350	NRRL Y-5850	Danielia oregonensis
GCA_003706395.2	PPLF00000000	SAMN08343354	NRRL YB-1246	Danielozyma ontarioensis
GCA_003706415.3	PPLG00000000	SAMN08343353	NRRL YB-1937	Deakozyma indianensis
GCA_003708665.2	PPOX00000000	SAMN08343254	NRRL Y-17914	Debaryomyces fabryi
GCA_003708605.2	PPOS00000000	SAMN08343259	NRRL Y-2171	Debaryomyces maramus
GCA_003708585.1	PPOR00000000	SAMN08343260	NRRL Y-7108	Debaryomyces nepalensis
GCA_003708935.1	PPOQ00000000	SAMN08343261	NRRL Y-27369	Debaryomyces prosopidis
GCA_003708965.2	PPOW00000000	SAMN08343255	NRRL Y-6666	Debaryomyces subglobosus
GCA_003705635.1	PPJD00000000	SAMN08343408	NRRL Y-48781	Diddensiella caesifluorescens
GCA_003707475.1	PPJE00000000	SAMN08343407	NRRL Y-12859	Dipodascus albidus
GCA_003708655.1	PPOV00000000	SAMN08343256	NRRL Y-17628	Dipodascus geniculatus
GCA_003708445.3	PPXN00000000	SAMN08343274	NRRL Y-17245	Grigorovia transvaalensis
GCA_003709265.2	PPOC00000000	SAMN08343276	NRRL Y-48837	Grigorovia yakushimaensis
GCA_003708315.3	PPNW00000000	SAMN08343282	NRRL Y-17090	Groenewaldozyma salmanticensis
GCA_003706385.1	PPLD00000000	SAMN08343356	NRRL Y-27515	Hanseniaspora clermontiae
GCA_003708765.1	PPNQ00000000	SAMN08343288	ZIM2327 Neza Cadez; ST-476	Hanseniaspora hatyaiensis (nom. inval.)
GCA_003707715.2	PPLC00000000	SAMN08343357	NRRL Y-1613	Hanseniaspora osmophila
GCA_003708335.1	PPNX00000000	SAMN08343281	ZIM213 Neza Cadez	Hanseniaspora pseudoguilliermondii
GCA_003708365.1	PPNY00000000	SAMN08343280	ZIM2326 Neza Cadez; ST-244	Hanseniaspora singularis (nom. inval.)
GCA_003708205.2	PPNP00000000	SAMN08343289	NRRL Y-27225	Isabelozyma gotoi
GCA_003706925.2	PPMQ00000000	SAMN08343316	NRRL Y-7502	Isabelozyma heimii
GCA_003708425.3	PPOD00000000	SAMN08343275	NRRL Y-17919	Jamesozyma rosinii
GCA_003708825.3	PPOE00000000	SAMN08343273	NRRL Y-17920	Jamesozyma spencerorum
GCA_003708535.3	PPOP00000000	SAMN08343262	NRRL Y-48836	Kazachstania bromeliacearum
GCA_003708465.2	PPOH00000000	SAMN08343270	NRRL Y-27209	Kazachstania kunashirensis
GCA_003708925.3	PPOM00000000	SAMN08343265	NRRL Y-409	Kazachstania martiniae
GCA_003708865.2	PPOK00000000	SAMN08343267	NRRL Y-48846	Kazachstania taianensis
GCA_003708455.1	PPOF00000000	SAMN08343272	NRRL Y-27206	Kazachstania viticola
GCA_003707555.2	PPJO00000000	SAMN08343397	NRRL YB-4510	Kluyveromyces aestuarii
GCA_003705805.3	PPJP00000000	SAMN08343396	NRRL Y-1974	Kluyveromyces dobzhanskii
GCA_003705835.3	PPJQ00000000	SAMN08343395	NRRL Y-17356	Kockiozyma suomiensis
GCA_003705675.1	PPJF00000000	SAMN08343406	NRRL Y-27713	Kodamaea laetipori
GCA_003708155.2	PPNN00000000	SAMN08343291	NRRL Y-1932	Kodamaea ohmeri
GCA_003707425.3	PPJA00000000	SAMN08343411	NRRL Y-27358	Kodamaea restingae
GCA_003705255.3	PPIA00000000	SAMN08343437	NRRL YB-455	Komagataella populi
GCA_003671595.3	PPKX00000000	SAMN08343362	NRRL Y-27603	Komagataella pseudopastoris
GCA_003706305.3	PPKW00000000	SAMN08343363	NRRL Y-27899	Kuraishia molischiana
GCA_003706285.3	PPKV00000000	SAMN08343364	NRRL Y-48474	Kuraishia ogatae
GCA_003707135.1	PPNG00000000	SAMN08343298	NRRL Y-48386	Kurtzmaniella cleridarum
GCA_003706895.1	PPMP00000000	SAMN08343317	NRRL Y-17910	Kurtzmaniella fragi
GCA_003707585.2	PPJT00000000	SAMN08343392	NRRL Y-17921	Lipomyces arxii
GCA_003705865.1	PPJU00000000	SAMN08343391	NRRL Y-27504	Lipomyces doorenjongii
GCA_003705895.2	PPJV00000000	SAMN08343390	NRRL Y-17848	Lipomyces japonicus
GCA_003705915.2	PPJX00000000	SAMN08343388	NRRL Y-11555	Lipomyces lipofer
GCA_003705845.3	PPJS00000000	SAMN08343393	NRRL Y-27506	Lipomyces mesembrius
GCA_003707545.3	PPJR00000000	SAMN08343394	NRRL Y-17247	Lipomyces oligophaga
GCA_003705905.2	PPJW00000000	SAMN08343389	NRRL Y-11553	Lipomyces sp. NRRL Y-11553
GCA_003708635.2	PPOU00000000	SAMN08343257	NRRL Y-7288	Magnusiomyces tetraspermus NRRL Y-7288
GCA_003705535.2	PPIT00000000	SAMN08343418	NRRL Y-11514	Martiniozyma abietophila
GCA_003708545.1	PPOO00000000	SAMN08343263	NRRL Y-48834	Maudiozyma turicensis
GCA_003708615.1	PPOT00000000	SAMN08343258	NRRL Y-27473	Metschnikowia hawaiiana
GCA_003705555.1	PPIU00000000	SAMN08343417	NRRL Y-27644	Meyerozyma athensensis
GCA_003708495.2	PPOI00000000	SAMN08343269	NRRL Y-27976	Monosporozyma aerobia
GCA_003708905.3	PPOL00000000	SAMN08343266	NRRL Y-48842	Monosporozyma siamensis
GCA_003708835.2	PPOG00000000	SAMN08343271	NRRL Y-27207	Monosporozyma solicola
GCA_003708525.3	PPON00000000	SAMN08343264	NRRL Y-1556	Monosporozyma unispora
GCA_003705595.2	PPIV00000000	SAMN08343416	NRRL Y-12810	Nadsonia fulvescens var. fulvescens NRRL Y-12810
GCA_003706265.2	PPKU00000000	SAMN08343365	NRRL Y-2155	Nakazawaea holstii
GCA_003706155.2	PPKO00000000	SAMN08343371	NRRL YB-2185	Ogataea glucozyma
GCA_003705115.2	PPHT00000000	SAMN08343444	NRRL YB-2194	Ogataea henricii
GCA_003706165.3	PPKP00000000	SAMN08343370	NRRL Y-17234	Ogataea kodamae
GCA_003706205.2	PPKQ00000000	SAMN08343369	NRRL Y-17250	Ogataea methylovora
GCA_003706195.2	PPKR00000000	SAMN08343368	NRRL Y-411	Ogataea minuta
GCA_003706235.2	PPKS00000000	SAMN08343367	NRRL Y-7654	Ogataea naganishii
GCA_003705625.1	PPIW00000000	SAMN08343415	NRRL Y-48449	Ogataea nitratoaversa
GCA_003706255.2	PPKT00000000	SAMN08343366	NRRL YB-2203	Ogataea nonfermentans
GCA_003706115.3	PPKN00000000	SAMN08343372	NRRL Y-7210	Ogataea philodendri
GCA_003707685.2	PPKM00000000	SAMN08343373	NRRL Y-27598	Ogataea pilisensis
GCA_003707665.2	PPKL00000000	SAMN08343374	NRRL Y-11528	Ogataea pini
GCA_003707375.2	PPIX00000000	SAMN08343414	NRRL Y-48632	Ogataea populi-albae
GCA_003706105.3	PPKK00000000	SAMN08343375	NRRL YB-1985	Ogataea ramenticola
GCA_003706095.2	PPKJ00000000	SAMN08343376	NRRL Y-27595	Ogataea trehaloabstinens
GCA_003707645.2	PPKI00000000	SAMN08343377	NRRL Y-6781	Ogataea trehalophila
GCA_003709205.3	PPKH00000000	SAMN08343378	NRRL Y-27601	Ogataea zsoltii
GCA_003706045.2	PPKG00000000	SAMN08343379	NRRL YB-4247	Peterozyma toletana
GCA_003706035.2	PPKF00000000	SAMN08343380	NRRL Y-12939	Peterozyma xylosa
GCA_003707195.2	PPNI00000000	SAMN08343296	NRRL Y-12881	Phaffomyces antillensis
GCA_003707165.2	PPNH00000000	SAMN08343297	NRRL Y-11707	Phaffomyces opuntiae
GCA_003707215.2	PPNJ00000000	SAMN08343295	NRRL Y-11709	Phaffomyces thermotolerans
GCA_003707355.1	PPIS00000000	SAMN08343419	NRRL Y-10920	Pichia exigua
GCA_003705525.2	PPIR00000000	SAMN08343420	NRRL Y-10967	Pichia heedii
GCA_003705515.2	PPIQ00000000	SAMN08343421	NRRL Y-5396	Pichia kudriavzevii
GCA_003705495.1	PPIP00000000	SAMN08343422	NRRL Y-7686	Pichia nakasei
GCA_003705465.1	PPIO00000000	SAMN08343423	NRRL Y-7687	Pichia norvegensis
GCA_003705455.2	PPIN00000000	SAMN08343424	NRRL Y-7552	Pichia occidentalis
GCA_003706875.2	PPMO00000000	SAMN08343318	NRRL YB-4310	Pichia terricola
GCA_003706855.2	PPMN00000000	SAMN08343319	NRRL Y-7501	Priceomyces castillae
GCA_003705335.1	PPIF00000000	SAMN08343432	NRRL Y-7122	Priceomyces medius
GCA_003705375.1	PPIG00000000	SAMN08343431	NRRL Y-17639	Saccharomycopsis capsularis
GCA_003707255.2	PPIH00000000	SAMN08343430	NRRL Y-27828	Saturnispora hagleri
GCA_003705365.1	PPII00000000	SAMN08343429	NRRL Y-11515	Saturnispora mendoncae
GCA_003707305.1	PPIJ00000000	SAMN08343428	NRRL Y-6671	Saturnispora saitoi
GCA_003705415.1	PPIK00000000	SAMN08343427	NRRL Y-48717	Saturnispora serradocipensis
GCA_003707315.2	PPIL00000000	SAMN08343426	NRRL Y-6725	Saturnispora silvae
GCA_003705435.2	PPIM00000000	SAMN08343425	NRRL Y-7008	Saturnispora zaruensis
GCA_003705305.2	PPIE00000000	SAMN08343433	NRRL Y-48265	Spencermartinsiella europaea
GCA_003705295.1	PPID00000000	SAMN08343434	NRRL Y-11591	Sporopachydermia lactativora
GCA_003708085.1	PPNC00000000	SAMN08343302	NRRL Y-10978	Starmera amethionina
GCA_003705275.1	PPIB00000000	SAMN08343436	NRRL YB-4281	Starmera quercuum
GCA_003707265.1	PPIC00000000	SAMN08343435	NRRL Y-17912	Starmera stellimalicola
GCA_003706525.2	PPLP00000000	SAMN08343344	NRRL YB-2417	Suhomyces canberraensis
GCA_003708845.3	PPOJ00000000	SAMN08343268	NRRL Y-48847	Sungouiozyma intestinalis
GCA_003707605.2	PPKB00000000	SAMN08343384	NRRL Y-27350	Tetrapisispora fleetii
GCA_003705975.2	PPKC00000000	SAMN08343383	NRRL Y-27309	Tetrapisispora iriomotensis
GCA_003705985.2	PPKD00000000	SAMN08343382	NRRL Y-27982	Tetrapisispora namnaoensis
GCA_003706575.2	PPLT00000000	SAMN08343340	NRRL Y-27777	Teunomyces cretensis
GCA_003706565.3	PPLS00000000	SAMN08343341	NRRL Y-48064	Teunomyces gatunensis
GCA_003706535.2	PPLR00000000	SAMN08343342	NRRL Y-17087	Teunomyces kruisii
GCA_003707115.1	PPNB00000000	SAMN08343303	NRRL Y-17035	Tortispora ganteri
GCA_003706775.2	PPMJ00000000	SAMN08343323	NRRL Y-63665	Tortispora starmeri
GCA_003705175.3	PPHX00000000	SAMN08343440	NRRL Y-17532	Torulaspora franciscae
GCA_003706005.2	PPKE00000000	SAMN08343381	NRRL Y-17251	Torulaspora pretoriensis
GCA_003706805.2	PPMK00000000	SAMN08343322	NRRL Y-5715	Trigonopsis vinaria
GCA_003705615.1	PPIZ00000000	SAMN08343412	NRRL Y-27362	Wickerhamiella cacticola
GCA_003707985.2	PPMI00000000	SAMN08343324	NRRL Y-11625	Wickerhamomyces alni
GCA_003707015.3	PPMU00000000	SAMN08343311	NRRL Y-1888	Wickerhamomyces canadensis
GCA_003706815.2	PPML00000000	SAMN08343321	NRRL YB-2243	Wickerhamomyces sp. NRRL YB-2243
GCA_003706715.1	PPMF00000000	SAMN08343328	NRRL Y-7903	Yamadazyma nakazawae
GCA_003706995.3	PPMV00000000	SAMN08343310	NRRL Y-7813	Yamadazyma philogaea
GCA_003707025.2	PPMW00000000	SAMN08343309	NRRL Y-5512	Yamadazyma scolyti
GCA_003707035.1	PPMX00000000	SAMN08343308	NRRL Y-63668	Yarrowia bubula
GCA_003708045.1	PPMY00000000	SAMN08343307	NRRL Y-63741	Yarrowia divulgata
GCA_003707995.1	PPMT00000000	SAMN08343313	NRRL Y-17406	Yueomyces sinensis
GCA_003707935.2	PPMD00000000	SAMN08343330	NRRL Y-17319	Zygoascus meyerae
GCA_003707595.2	PPKA00000000	SAMN08343385	NRRL Y-12626	Zygosaccharomyces bisporus
GCA_003705955.2	PPJZ00000000	SAMN08343386	NRRL YB-4811	Zygosaccharomyces kombuchaensis
GCA_003671575.3	PPJY00000000	SAMN08343387	NRRL Y-1560	Zygotorulaspora florentina
GCA_003671565.1	PPHZ00000000	SAMN08343438	NRRL Y-12654	Zygotorulaspora mrakii
GCA_003708745.2	PPPA00000000	SAMN08343251	NRRL Y-27908	[Candida] ascalaphidarum
GCA_003707735.2	PPLE00000000	SAMN08343355	NRRL Y-7957A	[Candida] freyschussii
GCA_003708755.1	PPPB00000000	SAMN08343250	NRRL Y-48707	[Candida] golubevii
GCA_003708985.3	PPPC00000000	SAMN08343249	NRRL Y-27707	[Candida] gorgasii
GCA_003706965.1	PPSY00000000	SAMN08343312	NRRL Y-5580	[Candida] hispaniensis
GCA_003706615.3	PPLU00000000	SAMN08343339	NRRL Y-17326	[Candida] montana
GCA_003708145.3	PPNK00000000	SAMN08343294	NRRL Y-27336	[Candida] orba
GCA_003706755.2	PPMG00000000	SAMN08343327	NRRL YB-2307	[Candida] ponderosae
GCA_003707405.2	PPIY00000000	SAMN08343413	NRRL Y-17078	[Candida] schatavii
GCA_003708705.1	PPOY00000000	SAMN08343253	NRRL Y-8257	[Candida] tammaniensis
GCA_003708715.3	PPOZ00000000	SAMN08343252	NRRL Y-48709	[Candida] wancherniae

SRA Data Details

Parameter	Value
Data volume, Gbases	173
Data volume, Tbytes	0.10

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Saccharomycotina (true yeasts)

Sequencing of 196 yeast species from the subphylum Saccharomycotina Genome sequencing and assembly

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