See
Genome Information for Juglans microcarpa x Juglans regia
Members of the genus Juglans are monecious wind-pollinated trees in the family Juglandaceae with highly heterozygous genomes, which greatly complicates genome sequence assembly. The genomes of interspecific hybrids are usually comprised of haploid genomes of parental species. We exploited this attribute of interspecific hybrids to avoid heterozygosity and sequenced an interspecific hybrid Juglans microcarpa × J. regia using a novel combination of single-molecule sequencing and optical genome mapping technologies. PRJNA529253 represents Juglans microcarpa isolate 31.01, the maternal pseudohaplotype. PRJNA413991 represents Juglans regia cultivar Serr, the paternal pseudohaplotype.
| Accession | PRJNA529475 |
| Type | Umbrella project |
| Organism | Juglans microcarpa x Juglans regia[Taxonomy ID: 2249226] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans; Juglans microcarpa x Juglans regia |
| Publications | - Published online: Zhu T et al., "Sequencing a Juglans regia × J. microcarpa hybrid yields high-quality genome assemblies of parental species", Horticulture Researchvolume, 2019;6(1):55-70
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| Submission | Registration date: 27-Mar-2019
University of California, Davis |
| Relevance | Agricultural |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 50708 |
| WGS master | 2 |
| Transcript | 50504 |
| SRA Experiments | 58 |
| Protein Sequences | 43487 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 3 |
| Assembly | 2 |
Juglans microcarpa x Juglans regia isolate:MS1-56 encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes |
3
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