marine sediment metagenome (ID 297058) - BioProject

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Accession: PRJNA297058 ID: 297058

marine sediment metagenome

surficial deep-sea sediment metagenome from the South Pacific

To understand the microbial processes that contribute to the removal of the labile organic matter, metagenomic sequencing and analysis was carried out on a sample of sediment collected from 0-5 cmbsf from SPG site 10 (U1369). More...

Accession	PRJNA297058
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine sediment metagenome[Taxonomy ID: 412755] unclassified sequences; metagenomes; ecological metagenomes; marine sediment metagenome
Publications	Tully BJ et al., "Potential Mechanisms for Microbial Energy Acquisition in Oxic Deep-Sea Sediments.", Appl Environ Microbiol, 2016 Jul 15;82(14):4232-43
Submission	Registration date: 15-Oct-2015 - University of Southern California - Benjamin Tully
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2391
WGS master	10
SRA Experiments	2
Publications
PubMed	1
PMC	1
Other datasets
BioSample	12
Assembly	10

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

10
10

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_001643485.1	LXTL00000000	SAMN04113178	SPGG1	Alphaproteobacteria bacterium SPGG1
GCA_001643515.1	LXTF00000000	SAMN04113191	SPGG7	Alphaproteobacteria bacterium SPGG7
GCA_001643585.1	LXTD00000000	SAMN04113193	SPGG9	Chloroflexi bacterium SPGG9
GCA_001643565.1	LXTJ00000000	SAMN04113180	SPGG3	Nitrospina sp. SPGG3
GCA_001643555.1	LXTH00000000	SAMN04113182	SPGG5	Nitrospirae bacterium SPGG5
GCA_001643475.1	LXTK00000000	SAMN04113179	SPGG2	Proteobacteria bacterium SPGG2
GCA_001643635.1	LXTI00000000	SAMN04113181	SPGG4	Proteobacteria bacterium SPGG4
GCA_001643615.1	LXTE00000000	SAMN04113184	SPGG8	bacterium SPGG8
GCA_001643535.1	LXTG00000000	SAMN04113183	SPGG6	candidate division NC10 bacterium SPGG6
GCA_001316455.1	LKGT00000000	SAMN04113194	-	marine sediment metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	15
Data volume, Mbytes	9639

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marine sediment metagenome

surficial deep-sea sediment metagenome from the South Pacific

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