U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination

Links from Nucleotide

Accession: PRJNA297196 ID: 297196

soil metagenome

Meadow Soil samples from Angelo, CA Genome sequencing and assembly

Methylotrophy and archaeal heterotrophy dominate carbon turnover below the grass root zone

Annually, half of all plant-derived carbon is added to soil; most is rapidly respired to CO2 but some is exported to sustain life in lower horizons and the deeper biosphere. More...

AccessionPRJNA297196
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismsoil metagenome[Taxonomy ID: 410658]
unclassified sequences; metagenomes; ecological metagenomes; soil metagenome
PublicationsButterfield CN et al., "Proteogenomic analyses indicate bacterial methylotrophy and archaeal heterotrophy are prevalent below the grass root zone.", PeerJ, 2016;4:e2687
SubmissionRegistration date: 23-Dec-2016
Banfield Lab, University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)54305
WGS master211
Genomic DNA1
SRA Experiments10
Protein Sequences402941
Publications
PubMed1
PMC1
Other datasets
BioSample227
Assembly212
Assembly details:
Assembly levelNumber of Assemblies
1
203
8
212
AssemblyLevelWGSChrsBioSampleTaxonomy
GCA_001920875.1ScaffoldMNKP00000000
SAMN04327715
GCA_001920835.1ScaffoldMNKO00000000
SAMN04327719
GCA_001920815.1ScaffoldMNKN00000000
SAMN04327714
GCA_001920805.1ScaffoldMNKM00000000
SAMN04327683
GCA_001920795.1ScaffoldMNKL00000000
SAMN04327710
GCA_001920755.1ScaffoldMNKK00000000
SAMN04327716
GCA_001920415.1ScaffoldMNJR00000000
SAMN04327758
GCA_001920375.1ScaffoldMNJQ00000000
SAMN04327753
GCA_001920165.1ScaffoldMNJG00000000
SAMN04327796
GCA_001920155.1ScaffoldMNJF00000000
SAMN04327790
GCA_001919715.1ScaffoldMNIJ00000000
SAMN04327674
GCA_001919455.1ScaffoldMNHX00000000
SAMN04327952
GCA_001919435.1ScaffoldMNHW00000000
SAMN04327961
GCA_001919445.1ScaffoldMNHV00000000
SAMN04327960
GCA_001919385.1ScaffoldMNHU00000000
SAMN04327971
GCA_001919375.1ScaffoldMNHT00000000
SAMN04327959
GCA_001919365.1ScaffoldMNHS00000000
SAMN04327954
GCA_001918905.1ScaffoldMNGV00000000
SAMN04328011
GCA_001918885.1ScaffoldMNGU00000000
SAMN04327998
GCA_001918865.1ScaffoldMNGT00000000
SAMN04328008
GCA_001918415.1ScaffoldMNFX00000000
SAMN04327873
GCA_001918405.1ScaffoldMNFW00000000
SAMN04327893
GCA_001918395.1ScaffoldMNFV00000000
SAMN04327895
GCA_001918375.1ScaffoldMNFU00000000
SAMN04327879
GCA_001918335.1ScaffoldMNFT00000000
SAMN04327899
GCA_001917925.1ScaffoldMNEY00000000
SAMN04327835
GCA_001917905.1ScaffoldMNEX00000000
SAMN04327850
GCA_001917455.1ScaffoldMNEB00000000
SAMN04327909
GCA_001917435.1ScaffoldMNEA00000000
SAMN04327919
GCA_001915135.1ScaffoldMNDZ00000000
SAMN04327918
GCA_001914795.1ScaffoldMNDF00000000
SAMN04327808
GCA_001914785.1ScaffoldMNDE00000000
SAMN04327818
GCA_001914775.1ScaffoldMNDD00000000
SAMN04327823
GCA_001914735.1ScaffoldMNDC00000000
SAMN04327820
GCA_001918935.1ScaffoldMNGW00000000
SAMN04327992
GCA_001917495.1ScaffoldMNEC00000000
SAMN04327924
GCA_001914815.1ScaffoldMNDG00000000
SAMN04327822
GCA_001920735.1ScaffoldMNKJ00000000
SAMN04327713
GCA_001920725.1ScaffoldMNKI00000000
SAMN04327712
GCA_001920335.1ScaffoldMNJP00000000
SAMN04327750
GCA_001920325.1ScaffoldMNJO00000000
SAMN04327755
GCA_001920275.1ScaffoldMNJM00000000
SAMN04327751
GCA_001920115.1ScaffoldMNJE00000000
SAMN04327801
GCA_001920095.1ScaffoldMNJD00000000
SAMN04327795
GCA_001920085.1ScaffoldMNJC00000000
SAMN04327798
GCA_001919355.1ScaffoldMNHR00000000
SAMN04327949
GCA_001919305.1ScaffoldMNHQ00000000
SAMN04327963
GCA_001918845.1ScaffoldMNGS00000000
SAMN04327994
GCA_001918325.1ScaffoldMNFS00000000
SAMN04327876
GCA_001917895.1ScaffoldMNEW00000000
SAMN04327839
GCA_001917445.1ScaffoldMNDY00000000
SAMN04327922
GCA_001917385.1ScaffoldMNDX00000000
SAMN04327921
GCA_001915145.1ScaffoldMNDW00000000
SAMN04327917
GCA_001914705.1ScaffoldMNDB00000000
SAMN04327824
GCA_001920255.1ScaffoldMNJL00000000
SAMN04327754
GCA_001920055.1ScaffoldMNJB00000000
SAMN04327799
GCA_001915105.1ScaffoldMNDV00000000
SAMN04327923
GCA_001920045.1ScaffoldMNJA00000000
SAMN04327800
GCA_001918835.1ScaffoldMNGR00000000
SAMN04327990
GCA_001917855.1ScaffoldMNEU00000000
SAMN04327838
GCA_001920025.1ScaffoldMNIZ00000000
SAMN04327781
GCA_001920245.1ScaffoldMNJK00000000
SAMN04327757
GCA_001919685.1ScaffoldMNIH00000000
SAMN04327673
GCA_001918295.1ScaffoldMNFQ00000000
SAMN04327886
GCA_001917865.1ScaffoldMNEV00000000
SAMN04327844
GCA_001920485.1ScaffoldMNJX00000000
SAMN04327721
GCA_001920495.1ScaffoldMNJW00000000
SAMN04327708
GCA_001920475.1ScaffoldMNJV00000000
SAMN04327707
GCA_001919805.1ScaffoldMNIO00000000
SAMN04327787
GCA_001919785.1ScaffoldMNIN00000000
SAMN04327762
GCA_001919765.1ScaffoldMNIM00000000
SAMN04327794
GCA_001919515.1ScaffoldMNHZ00000000
SAMN04327670
GCA_001919045.1ScaffoldMNHC00000000
SAMN04327956
GCA_001919035.1ScaffoldMNHB00000000
SAMN04327964
GCA_001919015.1ScaffoldMNHA00000000
SAMN04327925
GCA_001918485.1ScaffoldMNGA00000000
SAMN04328012
GCA_001918035.1ScaffoldMNFE00000000
SAMN04327883
GCA_001918015.1ScaffoldMNFD00000000
SAMN04327884
GCA_001918005.1ScaffoldMNFC00000000
SAMN04327888
GCA_001917585.1ScaffoldMNEG00000000
SAMN04327837
GCA_001917535.1ScaffoldMNEF00000000
SAMN04327836
GCA_001917525.1ScaffoldMNEE00000000
SAMN04327833
GCA_001914905.1ScaffoldMNDK00000000
SAMN04327911
GCA_001914885.1ScaffoldMNDJ00000000
SAMN04327906
GCA_001914555.1ScaffoldMNCS00000000
SAMN04327825
GCA_001914535.1ScaffoldMNCR00000000
SAMN04327821
GCA_001914455.1ScaffoldMNCQ00000000
SAMN04327827
GCA_001914465.1ScaffoldMNCP00000000
SAMN04327816
GCA_001920315.1ScaffoldMNJN00000000
SAMN04327756
GCA_001920665.1ScaffoldMNKF00000000
SAMN04327720
GCA_001920645.1ScaffoldMNKE00000000
SAMN04327709
GCA_001919975.1ScaffoldMNIX00000000
SAMN04327803
GCA_001919965.1ScaffoldMNIW00000000
SAMN04327791
GCA_001919645.1ScaffoldMNIG00000000
SAMN04327672
GCA_001919625.1ScaffoldMNIF00000000
SAMN04327671
GCA_001919605.1ScaffoldMNIE00000000
SAMN04327668
GCA_001919215.1ScaffoldMNHM00000000
SAMN04327951
GCA_001919205.1ScaffoldMNHL00000000
SAMN04327955
GCA_001919195.1ScaffoldMNHK00000000
SAMN04327965
GCA_001918815.1ScaffoldMNGQ00000000
SAMN04328009
GCA_001918795.1ScaffoldMNGP00000000
SAMN04328013
GCA_001918245.1ScaffoldMNFO00000000
SAMN04327889
GCA_001918235.1ScaffoldMNFN00000000
SAMN04327887
GCA_001918205.1ScaffoldMNFM00000000
SAMN04327892
GCA_001918185.1ScaffoldMNFL00000000
SAMN04327874
GCA_001917825.1ScaffoldMNET00000000
SAMN04327843
GCA_001917815.1ScaffoldMNES00000000
SAMN04327847
GCA_001917775.1ScaffoldMNER00000000
SAMN04327834
GCA_001917785.1ScaffoldMNEQ00000000
SAMN04327846
GCA_001917745.1ScaffoldMNEP00000000
SAMN04327851
GCA_001917735.1ScaffoldMNEO00000000
SAMN04327840
GCA_001920635.1ScaffoldMNKD00000000
SAMN04327686
GCA_001920575.1ScaffoldMNKC00000000
SAMN04327724
GCA_001919175.1ContigMNHJ00000000
SAMN04327957
GCA_001918765.1ScaffoldMNGO00000000
SAMN04328000
GCA_001918745.1ScaffoldMNGN00000000
SAMN04328004
GCA_001918735.1ScaffoldMNGM00000000
SAMN04328002
GCA_001918715.1ScaffoldMNGL00000000
SAMN04328014
GCA_001919945.1ScaffoldMNIV00000000
SAMN04327782
GCA_001919235.1ScaffoldMNHI00000000
SAMN04327943
GCA_001969245.1Complete genomeSAMN04116731
GCA_001919935.1ScaffoldMNIU00000000
SAMN04327760
GCA_001918675.1ScaffoldMNGK00000000
SAMN04327991
GCA_001920585.1ScaffoldMNKB00000000
SAMN04327711
GCA_001918665.1ScaffoldMNGJ00000000
SAMN04327997
GCA_001918655.1ScaffoldMNGI00000000
SAMN04328010
GCA_001918165.1ScaffoldMNFK00000000
SAMN04327894
GCA_001918155.1ScaffoldMNFJ00000000
SAMN04327890
GCA_001917705.1ScaffoldMNEN00000000
SAMN04327845
GCA_001920565.1ContigMNKA00000000
SAMN04327679
GCA_001919915.1ScaffoldMNIT00000000
SAMN04327793
GCA_001918635.1ScaffoldMNGH00000000
SAMN04328016
GCA_001914695.1ScaffoldMNCZ00000000
SAMN04327817
GCA_001920555.1ScaffoldMNJZ00000000
SAMN04327717
GCA_001919895.1ScaffoldMNIS00000000
SAMN04327792
GCA_001919865.1ScaffoldMNIR00000000
SAMN04327786
GCA_001919595.1ContigMNID00000000
SAMN04327676
GCA_001919565.1ScaffoldMNIC00000000
SAMN04327667
GCA_001919545.1ContigMNIB00000000
SAMN04327678
GCA_001919535.1ScaffoldMNIA00000000
SAMN04327677
GCA_001919145.1ScaffoldMNHH00000000
SAMN04327970
GCA_001919115.1ScaffoldMNHG00000000
SAMN04327962
GCA_001918595.1ScaffoldMNGG00000000
SAMN04327996
GCA_001918575.1ScaffoldMNGF00000000
SAMN04327993
GCA_001918585.1ScaffoldMNGE00000000
SAMN04328006
GCA_001918555.1ScaffoldMNGD00000000
SAMN04328007
GCA_001918525.1ScaffoldMNGC00000000
SAMN04327995
GCA_001918125.1ScaffoldMNFI00000000
SAMN04327882
GCA_001918115.1ScaffoldMNFH00000000
SAMN04327875
GCA_001918085.1ScaffoldMNFG00000000
SAMN04327885
GCA_001917695.1ScaffoldMNEM00000000
SAMN04327848
GCA_001917665.1ScaffoldMNEL00000000
SAMN04327852
GCA_001917655.1ScaffoldMNEK00000000
SAMN04327849
GCA_001917615.1ScaffoldMNEJ00000000
SAMN04327841
GCA_001917625.1ScaffoldMNEI00000000
SAMN04327853
GCA_001914645.1ScaffoldMNCY00000000
SAMN04327830
GCA_001914635.1ContigMNCX00000000
SAMN04327829
GCA_001915025.1ScaffoldMNDR00000000
SAMN04327915
GCA_001915005.1ScaffoldMNDQ00000000
SAMN04327916
GCA_001914985.1ScaffoldMNDP00000000
SAMN04327920
GCA_001914625.1ScaffoldMNCW00000000
SAMN04327813
GCA_001914615.1ScaffoldMNCV00000000
SAMN04327819
GCA_001914565.1ScaffoldMNCU00000000
SAMN04327814
GCA_001920195.1ScaffoldMNJI00000000
SAMN04327727
GCA_001919105.1ScaffoldMNHF00000000
SAMN04327940
GCA_001920235.1ScaffoldMNJJ00000000
SAMN04327752
GCA_001919995.1ScaffoldMNIY00000000
SAMN04327789
GCA_001919845.1ScaffoldMNIQ00000000
SAMN04327761
GCA_001918255.1ScaffoldMNFP00000000
SAMN04327896
GCA_001914965.1ScaffoldMNDO00000000
SAMN04327901
GCA_001915055.1ScaffoldMNDS00000000
SAMN04327908
GCA_001914715.1ScaffoldMNDA00000000
SAMN04327812
GCA_001919095.1ScaffoldMNHE00000000
SAMN04327926
GCA_001920515.1ScaffoldMNJY00000000
SAMN04327718
GCA_001919835.1ScaffoldMNIP00000000
SAMN04327802
GCA_001919055.1ScaffoldMNHD00000000
SAMN04327928
GCA_001918505.1ScaffoldMNGB00000000
SAMN04328003
GCA_001918075.1ScaffoldMNFF00000000
SAMN04327881
GCA_001917575.1ScaffoldMNEH00000000
SAMN04327842
GCA_001917375.1ScaffoldMNDN00000000
SAMN04327903
GCA_001914955.1ScaffoldMNDM00000000
SAMN04327910
GCA_001914935.1ScaffoldMNDL00000000
SAMN04327902
GCA_001914545.1ScaffoldMNCT00000000
SAMN04327828
GCA_001920445.1ContigMNJU00000000
SAMN04327681
GCA_001920405.1ScaffoldMNJT00000000
SAMN04327680
GCA_001920395.1ScaffoldMNJS00000000
SAMN04327723
GCA_001918995.1ContigMNGZ00000000
SAMN04327966
GCA_001918975.1ScaffoldMNGY00000000
SAMN04327968
GCA_001919295.1ScaffoldMNHP00000000
SAMN04327967
GCA_001918945.1ScaffoldMNGX00000000
SAMN04327969
GCA_001917505.1ScaffoldMNED00000000
SAMN04327832
GCA_001918475.1ScaffoldMNFZ00000000
SAMN04327999
GCA_001918455.1ScaffoldMNFY00000000
SAMN04328015
GCA_001917995.1ScaffoldMNFB00000000
SAMN04327891
GCA_001917965.1ScaffoldMNFA00000000
SAMN04327878
GCA_001920175.1ScaffoldMNJH00000000
SAMN04327759
GCA_001919755.1ScaffoldMNIL00000000
SAMN04327788
GCA_001919725.1ScaffoldMNIK00000000
SAMN04327797
GCA_001919485.1ScaffoldMNHY00000000
SAMN04327675
GCA_001917935.1ScaffoldMNEZ00000000
SAMN04327898
GCA_001914875.1ScaffoldMNDI00000000
SAMN04327907
GCA_001914855.1ContigMNDH00000000
SAMN04327912
GCA_001914485.1ScaffoldMNCO00000000
SAMN04327815
GCA_001914475.1ScaffoldMNCN00000000
SAMN04327826
GCA_001920715.1ScaffoldMNKH00000000
SAMN04327685
GCA_001920655.1ScaffoldMNKG00000000
SAMN04327726
GCA_001919675.1ScaffoldMNII00000000
SAMN04327669
GCA_001919285.1ScaffoldMNHO00000000
SAMN04327953
GCA_001919275.1ScaffoldMNHN00000000
SAMN04327958
GCA_001918315.1ScaffoldMNFR00000000
SAMN04327880
GCA_001915075.1ScaffoldMNDU00000000
SAMN04327913
GCA_001915065.1ScaffoldMNDT00000000
SAMN04327914
SRA Data Details
ParameterValue
Data volume, Gbases220
Data volume, Tbytes0.13

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center