ID 550209 - BioProject

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Accession: PRJNA550209 ID: 550209

Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

Drosophila melanogaster-associated bacteria in an experimental evolution plot

Accession	PRJNA550209
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Rudman SM et al., "Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster.", Proc Natl Acad Sci U S A, 2019 Oct 1;116(40):20025-20032
Grants	"Genomics of rapid adaptation on seasonal timescales in D. melanogaster" (Grant ID R01 GM100366, National Institute of General Medical Sciences)
Submission	Registration date: 22-Jun-2019 Brigham Young University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3234
WGS master	37
SRA Experiments	86
Protein Sequences	88722
Publications
PubMed	1
PMC	1
Other datasets
BioSample	123
Assembly	37

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

2
35
37

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_008689865.1	VHQD00000000	SAMN12113460	CS_004_W120	Acetobacter pomorum
GCA_008689845.1	VHQC00000000	SAMN12113461	CS_004_W121	Acetobacter pomorum
GCA_008689815.1	VHQB00000000	SAMN12113462	CS_004_W122	Acetobacter pomorum
GCA_008689795.1	VHOZ00000000	SAMN12113464	DmW_125	Acetobacter sp. DmW_125
GCA_008689805.1	VHPA00000000	SAMN12113463	DmW_125123	Acetobacter sp. DmW_125123
GCA_008704305.1	VHOO00000000	SAMN12113475	DmW_125124	Acetobacter sp. DmW_125124
GCA_008690725.1	VHOX00000000	SAMN12113466	DmW_125126	Acetobacter sp. DmW_125126
GCA_008704285.1	VHOQ00000000	SAMN12113473	DmW_125127	Acetobacter sp. DmW_125127
GCA_008704325.1	VHOP00000000	SAMN12113474	DmW_125128	Acetobacter sp. DmW_125128
GCA_008690645.1	VHOV00000000	SAMN12113468	DmW_125129	Acetobacter sp. DmW_125129
GCA_008690765.1	VHOY00000000	SAMN12113465	DmW_125130	Acetobacter sp. DmW_125130
GCA_008690705.1	VHOW00000000	SAMN12113467	DmW_125131	Acetobacter sp. DmW_125131
GCA_008690915.1	VHOT00000000	SAMN12113470	DmW_125132	Acetobacter sp. DmW_125132
GCA_008690505.1	VHOS00000000	SAMN12113471	DmW_125133	Acetobacter sp. DmW_125133
GCA_008704295.1	VHOR00000000	SAMN12113472	DmW_125134	Acetobacter sp. DmW_125134
GCA_008690905.1	VHOU00000000	SAMN12113469	DmW_125135	Acetobacter sp. DmW_125135
GCA_008690365.1	VHON00000000	SAMN12113476	DmW_136	Acetobacter sp. DmW_136
GCA_008704245.1	VKJI00000000	SAMN12113478	CS_006_W138	Acetobacter tropicalis
GCA_008704255.1	VKJJ00000000	SAMN12113477	CS_006_W139	Acetobacter tropicalis
GCA_008690185.1	VHPP00000000	SAMN12113445	DmW_107	Weissella paramesenteroides
GCA_008690195.1	VHPS00000000	SAMN12113442	DmW_107099	Weissella paramesenteroides
GCA_008690165.1	VHPQ00000000	SAMN12113444	DmW_107106	Weissella paramesenteroides
GCA_008690155.1	VHPO00000000	SAMN12113446	DmW_107102	Weissella paramesenteroides
GCA_008690175.1	VHPR00000000	SAMN12113443	DmW_107100	Weissella paramesenteroides
GCA_008690135.1	VHPN00000000	SAMN12113447	DmW_107101	Weissella paramesenteroides
GCA_008690055.1	VHPJ00000000	SAMN12113451	DmW_109110	Weissella paramesenteroides
GCA_008690085.1	VHPL00000000	SAMN12113449	DmW_107105	Weissella paramesenteroides
GCA_008690075.1	VHPK00000000	SAMN12113450	DmW_107108	Weissella paramesenteroides
GCA_008690065.1	VHPM00000000	SAMN12113448	DmW_107104	Weissella paramesenteroides
GCA_008690035.1	VHPI00000000	SAMN12113452	DmW_109	Weissella paramesenteroides
GCA_008690005.1	VHPH00000000	SAMN12113453	DmW_115116	Weissella paramesenteroides
GCA_008689975.1	VHPG00000000	SAMN12113454	DmW_115	Weissella paramesenteroides
GCA_008689965.1	VHPF00000000	SAMN12113455	DmW_115112	Weissella paramesenteroides
GCA_008689955.1	VHPE00000000	SAMN12113456	DmW_115113	Weissella paramesenteroides
GCA_008689925.1	VHPC00000000	SAMN12113458	DmW_118119	Weissella paramesenteroides
GCA_008689905.1	VHPD00000000	SAMN12113457	DmW_115114	Weissella paramesenteroides
GCA_008689895.1	VHPB00000000	SAMN12113459	DmW_118	Weissella paramesenteroides

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	504

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Microbiome composition shapes rapid genomic adaptation of Drosophila melanogaster

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