See
Genome Information for Pimephales promelas
The reference sequence (RefSeq) genome assembly is derived from the submitted GenBank assembly (see linked project PRJNA565199). Annotation provided on the RefSeq genomic records is based on NCBI annotation pipeline.
| Accession | PRJNA702526 |
| Data Type | RefSeq Genome sequencing and assembly, RefSeq Transcriptome or Gene expression |
| Scope | Monoisolate |
| Organism | Pimephales promelas[Taxonomy ID: 90988] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Leuciscidae; Pogonichthyinae; Pimephales; Pimephales promelas |
| Publications | - Martinson JW et al., "De Novo Assembly of the Nearly Complete Fathead Minnow Reference Genome Reveals a Repetitive but Compact Genome.", Environ Toxicol Chem, 2022 Feb;41(2):448-461
- Liu S et al., "The complete mitochondrial genome of Pimephales promelas (Cypriniformes: Cyprinidae).", Mitochondrial DNA A DNA Mapp Seq Anal, 2016 Sep;27(5):3711-2
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| Submission | Registration date: 24-Jan-2021
US EPA |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 58209 |
| Transcript | 57299 |
| Protein Sequences | 48442 |
| Publications |
| PubMed | 2 |
| PMC | 1 |
| Other datasets |
| BioSample | 1 |
| Assembly | 1 |
Related GenBank Project
PRJNA565199 : Pimephales promelas strain:EPAAWBERC Genome sequencing and assembly