Reconstruction of 52,325 qualified genomes composed of 8,466 prokaryotic species-level clusters spanning 59 phyla, including genomes from deep-sea deeper than 1,000 m (n=3,337), low-oxygen zones of <90 micro mol O2 per kg water (n=7,884), and polar regions (n=7,752). All genomes are QS >= 50.
| Accession | PRJDB11811 |
| Data Type | Genome sequencing and assembly |
| Scope | Environment |
| Organism | marine metagenome[Taxonomy ID: 408172] unclassified sequences; metagenomes; ecological metagenomes; marine metagenome |
| Publications | Nishimura Y et al., "The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments.", Sci Data, 2022 Jun 17;9(1):305 |
| Submission | Registration date: 7-Apr-2022
Atmosphere and Ocean Research Institute, The University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan |
| Relevance | Environmental |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 3070500 |
| WGS master | 8466 |
| SRA Experiments | 9 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 52325 |
| Assembly | 1 |