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Links from Nucleotide

Accession: PRJDB11811 ID: 824727

marine metagenome

TPA_asm: The OceanDNA MAG catalog: 52,325 prokaryotic genomes reconstructed from various marine environments

Reconstruction of 52,325 qualified genomes composed of 8,466 prokaryotic species-level clusters spanning 59 phyla, including genomes from deep-sea deeper than 1,000 m (n=3,337), low-oxygen zones of <90 micro mol O2 per kg water (n=7,884), and polar regions (n=7,752). All genomes are QS >= 50.
AccessionPRJDB11811
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismmarine metagenome[Taxonomy ID: 408172]
unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
PublicationsNishimura Y et al., "The OceanDNA MAG catalog contains over 50,000 prokaryotic genomes originated from various marine environments.", Sci Data, 2022 Jun 17;9(1):305
SubmissionRegistration date: 7-Apr-2022
Atmosphere and Ocean Research Institute, The University of Tokyo; 5-1-5 Kashiwanoha, Kashiwa, Chiba 277-8564, Japan
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3070500
WGS master8466
SRA Experiments9
Publications
PubMed1
PMC1
Other datasets
BioSample52325
Assembly1

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