marine metagenome (ID 1136951) - BioProject

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Accession: PRJNA1136951 ID: 1136951

marine metagenome

Metagenome-assembled Genomes (MAGs) of multiple cyanobacterial lineages from Oxygen Deficient Marine Zones

Metagenomic read sets from the oxygen-deficient water column in the Eastern Pacific were analyzed to reconstruct metagenome-assembled genomes corresponding to the Prochlorococcus lineages AMZ I-III.

Accession	PRJNA1136951
Data Type	Genome sequencing
Scope	Multispecies
Publications	Jaffe AL et al., "Cyanobacteria from marine oxygen-deficient zones encode both form I and form II Rubiscos.", Proc Natl Acad Sci U S A, 2024 Dec 3;121(49):e2418345121
Submission	Registration date: 17-Jul-2024 Dekas Lab, Stanford University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	38
Publications
PubMed	1
PMC	1
Other datasets
BioSample	38
Assembly	38

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

33
5
38

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_045401495.1	JBGBYA000000000	SAMN42898312	PHECO_MAG_S_31_29	Prochlorococcus sp.
GCA_045401545.1	JBGBYC000000000	SAMN42898310	PHECO_MAG_S_26_83	Prochlorococcus sp.
GCA_045401425.1	JBGBXV000000000	SAMN42898317	PHECO_MAG_S_50_58	Prochlorococcus sp.
GCA_045401365.1	JBGBXU000000000	SAMN42898318	PHECO_MAG_S_11_8	Prochlorococcus sp.
GCA_045401385.1	JBGBXT000000000	SAMN42898319	PHECO_MAG_S_14_40	Prochlorococcus sp.
GCA_045401515.1	JBGBYB000000000	SAMN42898311	PHECO_MAG_S_32_141	Prochlorococcus sp.
GCA_045401445.1	JBGBXZ000000000	SAMN42898313	PHECO_MAG_S_25_52	Prochlorococcus sp.
GCA_045401455.1	JBGBXX000000000	SAMN42898315	PHECO_MAG_S_50_49	Prochlorococcus sp.
GCA_045401465.1	JBGBXY000000000	SAMN42898314	PHECO_MAG_S_29_144	Prochlorococcus sp.
GCA_045401355.1	JBGBXW000000000	SAMN42898316	PHECO_MAG_S_07_13	Prochlorococcus sp.
GCA_045401345.1	JBGBXQ000000000	SAMN42898322	PHECO_MAG_S_57_9	Prochlorococcus sp.
GCA_045401325.1	JBGBXS000000000	SAMN42898320	PHECO_MAG_S_15_52	Prochlorococcus sp.
GCA_045401285.1	JBGBXP000000000	SAMN42898323	PHECO_MAG_S_49_58	Prochlorococcus sp.
GCA_045401265.1	JBGBXN000000000	SAMN42898325	PHECO_MAG_S_46_84	Prochlorococcus sp.
GCA_045401275.1	JBGBXR000000000	SAMN42898321	PHECO_MAG_S_56_50	Prochlorococcus sp.
GCA_045401225.1	JBGBXO000000000	SAMN42898324	PHECO_MAG_S_41_70	Prochlorococcus sp.
GCA_045401125.1	JBGBXM000000000	SAMN42898326	PHECO_MAG_S_44_72	Prochlorococcus sp.
GCA_045401095.1	JBGBXK000000000	SAMN42898328	PHECO_MAG_S_42_22	Prochlorococcus sp.
GCA_045401105.1	JBGBXL000000000	SAMN42898327	PHECO_MAG_S_08_54	Prochlorococcus sp.
GCA_045400985.1	JBGBXI000000000	SAMN42898330	PHECO_MAG_S_58_119	Prochlorococcus sp.
GCA_045401015.1	JBGBXG000000000	SAMN42898332	PHECO_MAG_S_37_56	Prochlorococcus sp.
GCA_045400945.1	JBGBXJ000000000	SAMN42898329	PHECO_MAG_S_98_31	Prochlorococcus sp.
GCA_045400935.1	JBGBXH000000000	SAMN42898331	PHECO_MAG_S_25_35	Prochlorococcus sp.
GCA_045400795.1	JBGBXF000000000	SAMN42898333	PHECO_MAG_S_61_55	Prochlorococcus sp.
GCA_045400755.1	JBGBXC000000000	SAMN42898336	PHECO_MAG_S_44_60	Prochlorococcus sp.
GCA_045400745.1	JBGBXD000000000	SAMN42898335	PHECO_MAG_S_14_6	Prochlorococcus sp.
GCA_045400705.1	JBGBXB000000000	SAMN42898337	PHECO_MAG_S_11_10	Prochlorococcus sp.
GCA_045400675.1	JBGBXE000000000	SAMN42898334	PHECO_MAG_S_56_10	Prochlorococcus sp.
GCA_045400615.1	JBGBXA000000000	SAMN42898338	PHECO_MAG_S_56_37	Prochlorococcus sp.
GCA_045400555.1	JBGBWZ000000000	SAMN42898339	PHECO_MAG_S_49_90	Prochlorococcus sp.
GCA_045400475.1	JBGBWY000000000	SAMN42898340	PHECO_MAG_S_08_26	Prochlorococcus sp.
GCA_045400465.1	JBGBWX000000000	SAMN42898341	PHECO_MAG_S_50_7	Prochlorococcus sp.
GCA_045400485.1	JBGBWW000000000	SAMN42898342	PHECO_MAG_S_98_12	Prochlorococcus sp.
GCA_045400365.1	JBGBWT000000000	SAMN42898345	PHECO_MAG_S_07_35	Prochlorococcus sp.
GCA_045400355.1	JBGBWU000000000	SAMN42898344	PHECO_MAG_S_46_49	Prochlorococcus sp.
GCA_045400285.1	JBGBWS000000000	SAMN42898346	PHECO_MAG_S_25_54	Prochlorococcus sp.
GCA_045400275.1	JBGBWV000000000	SAMN42898343	PHECO_MAG_S_57_1	Prochlorococcus sp.
GCA_045400295.1	JBGBWR000000000	SAMN42898347	PHECO_MAG_S_15_61	Prochlorococcus sp.

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marine metagenome

Metagenome-assembled Genomes (MAGs) of multiple cyanobacterial lineages from Oxygen Deficient Marine Zones

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