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Accession: PRJNA47685 ID: 47685

Yersinia pestis

Denovo sequencing of 118 Yersinia pestis strains

See Genome Information for Yersinia pestis
This is a population analysis project of Yersinia pestis. A total of 118 strains were sequenced. More...
AccessionPRJNA47685
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismYersinia pestis[Taxonomy ID: 632]
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Yersiniaceae; Yersinia; Yersinia pestis
PublicationsCui Y et al., "Historical variations in mutation rate in an epidemic pathogen, Yersinia pestis.", Proc Natl Acad Sci U S A, 2013 Jan 8;110(2):577-82
SubmissionRegistration date: 7-Dec-2012
Beijing Genomics Institute
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)140305
WGS master118
SRA Experiments124
Publications
PubMed1
PMC1
Other datasets
BioSample236
Assembly118
Assembly details:
Assembly levelNumber of Assemblies
1
117
118
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_000324805.2ScaffoldADSA00000000SAMN02403074
EV76-CN
GCA_000324565.1ContigADRO00000000SAMN02403063
CMCC96001
GCA_000324205.1ContigADQW00000000SAMN02403045
CMCC43032
GCA_000324485.1ContigADRK00000000SAMN02403059
CMCC92004
GCA_000323705.1ContigADPX00000000SAMN02403019
A1956001
GCA_000323685.1ContigADPW00000000SAMN02403018
970754
GCA_000323665.1ContigADPV00000000SAMN02403017
945
GCA_000323645.1ContigADPU00000000SAMN02403016
91
GCA_000323605.1ContigADPS00000000SAMN02403014
780441
GCA_000323625.1ContigADPT00000000SAMN02403015
9
GCA_000323585.1ContigADPR00000000SAMN02403013
735
GCA_000323565.1ContigADPQ00000000SAMN02403012
7338
GCA_000323505.1ContigADPN00000000SAMN02403009
7
GCA_000323545.1ContigADPP00000000SAMN02403011
710317
GCA_000323525.1ContigADPO00000000SAMN02403010
71021
GCA_000325485.1ContigADTI00000000SAMN02403108
YN663
GCA_000325465.1ContigADTH00000000SAMN02403107
YN472
GCA_000325445.1ContigADTG00000000SAMN02403106
YN2588
GCA_000325425.1ContigADTF00000000SAMN02403105
YN2551
GCA_000325405.1ContigADTE00000000SAMN02403104
YN2179
GCA_000325385.1ContigADTD00000000SAMN02403103
YN1683
GCA_000325365.1ContigADTC00000000SAMN02403102
YN1065
GCA_000325345.1ContigADTB00000000SAMN02403101
SHAN12
GCA_000325325.1ContigADTA00000000SAMN02403100
SHAN11
GCA_000325305.1ContigADSZ00000000SAMN02403099
MGJZ9
GCA_000325285.1ContigADSY00000000SAMN02403098
MGJZ7
GCA_000325265.1ContigADSX00000000SAMN02403097
MGJZ6
GCA_000325245.1ContigADSW00000000SAMN02403096
MGJZ3
GCA_000325225.1ContigADSV00000000SAMN02403095
MGJZ12
GCA_000325205.1ContigADSU00000000SAMN02403094
MGJZ11
GCA_000325185.1ContigADST00000000SAMN02403093
M0000002
GCA_000325165.1ContigADSS00000000SAMN02403092
K21985002
GCA_000325145.1ContigADSR00000000SAMN02403091
K11973002
GCA_000325125.1ContigADSQ00000000SAMN02403090
J1978002
GCA_000325105.1ContigADSP00000000SAMN02403089
J1963002
GCA_000325085.1ContigADSO00000000SAMN02403088
I2001001
GCA_000325065.1ContigADSN00000000SAMN02403087
I1994006
GCA_000325045.1ContigADSM00000000SAMN02403086
I1991001
GCA_000325025.1ContigADSL00000000SAMN02403085
I1970005
GCA_000325005.1ContigADSK00000000SAMN02403084
I1969003
GCA_000324985.1ContigADSJ00000000SAMN02403083
I160001
GCA_000324965.1ContigADSI00000000SAMN02403082
H1959004
GCA_000324945.1ContigADSH00000000SAMN02403081
H1958004
GCA_000324925.1ContigADSG00000000SAMN02403080
G8786
GCA_000324905.1ContigADSF00000000SAMN02403079
G1996010
GCA_000324885.1ContigADSE00000000SAMN02403078
G1996006
GCA_000324865.1ContigADSD00000000SAMN02403077
F1984001
GCA_000324845.1ContigADSC00000000SAMN02403076
F1954001
GCA_000324825.1ContigADSB00000000SAMN02403075
F1946001
GCA_000324785.1ContigADRZ00000000SAMN02403021
E1979001
GCA_000324765.1ContigADRY00000000SAMN02403073
E1977001
GCA_000324745.1ContigADRX00000000SAMN02403072
D1991004
GCA_000324725.1ContigADRW00000000SAMN02403071
D1982001
GCA_000324705.1ContigADRV00000000SAMN02403070
D1964002
GCA_000324685.1ContigADRU00000000SAMN02403069
D1964001
GCA_000324665.1ContigADRT00000000SAMN02403068
CMCCN010025
GCA_000324645.1ContigADRS00000000SAMN02403067
CMCCK110001
GCA_000324625.1ContigADRR00000000SAMN02403066
CMCCK100001
GCA_000324605.1ContigADRQ00000000SAMN02403065
CMCC99103
GCA_000324585.1ContigADRP00000000SAMN02403064
CMCC96007
GCA_000324545.1ContigADRN00000000SAMN02403062
CMCC95001
GCA_000324525.1ContigADRM00000000SAMN02403061
CMCC93014
GCA_000324505.1ContigADRL00000000SAMN02403060
CMCC92010
GCA_000324465.1ContigADRJ00000000SAMN02403058
CMCC91090
GCA_000324445.1ContigADRI00000000SAMN02403057
CMCC90027
GCA_000324425.1ContigADRH00000000SAMN02403056
CMCC87001
GCA_000324405.1ContigADRG00000000SAMN02403055
CMCC84046
GCA_000324385.1ContigADRF00000000SAMN02403054
CMCC84038
GCA_000324365.1ContigADRE00000000SAMN02403053
CMCC84033
GCA_000324345.1ContigADRD00000000SAMN02403052
CMCC8211
GCA_000324325.1ContigADRC00000000SAMN02403051
CMCC71001
GCA_000324305.1ContigADRB00000000SAMN02403050
CMCC67001
GCA_000324285.1ContigADRA00000000SAMN02403049
CMCC640047
GCA_000324265.1ContigADQZ00000000SAMN02403048
CMCC64001
GCA_000324245.1ContigADQY00000000SAMN02403047
CMCC51020
GCA_000324225.1ContigADQX00000000SAMN02403046
CMCC49003
GCA_000324185.1ContigADQV00000000SAMN02403044
CMCC42007
GCA_000324165.1ContigADQU00000000SAMN02403043
CMCC38001
GCA_000324145.1ContigADQT00000000SAMN02403042
CMCC348002
GCA_000324125.1ContigADQS00000000SAMN02403041
CMCC347001
GCA_000324105.1ContigADQR00000000SAMN02403040
CMCC31004
GCA_000324085.1ContigADQQ00000000SAMN02403039
CMCC27002
GCA_000324065.1ContigADQP00000000SAMN02403038
CMCC21106
GCA_000324045.1ContigADQO00000000SAMN02403037
CMCC18019
GCA_000324025.1ContigADQN00000000SAMN02403036
CMCC125002
GCA_000324005.1ContigADQM00000000SAMN02403035
CMCC12003
GCA_000323985.1ContigADQL00000000SAMN02403034
CMCC114001
GCA_000323965.1ContigADQK00000000SAMN02403033
CMCC11001
GCA_000323945.1ContigADQJ00000000SAMN02403032
CMCC107004
GCA_000323925.1ContigADQI00000000SAMN02403031
CMCC106002
GCA_000323905.1ContigADQH00000000SAMN02403030
CMCC104003
GCA_000323885.1ContigADQG00000000SAMN02403029
CMCC10012
GCA_000323865.1ContigADQF00000000SAMN02403028
CMCC05013
GCA_000323845.1ContigADQE00000000SAMN02403027
CMCC05009
GCA_000323825.1ContigADQD00000000SAMN02403026
CMCC03001
GCA_000323805.1ContigADQC00000000SAMN02403025
CMCC02041
GCA_000323785.1ContigADQB00000000SAMN02403024
C1989001
GCA_000323765.1ContigADQA00000000SAMN02403023
C1976001
GCA_000323745.1ContigADPZ00000000SAMN02403022
C1975003
GCA_000323725.1ContigADPY00000000SAMN02403020
A1973001
GCA_000320425.1ContigADOV00000000SAMN02402991
12
GCA_000323325.1ContigADPE00000000SAMN02403000
34202
GCA_000323285.1ContigADPC00000000SAMN02402998
30017
GCA_000323305.1ContigADPD00000000SAMN02402999
34008
GCA_000323205.1ContigADOZ00000000SAMN02402995
2504
GCA_000320465.1ContigADOY00000000SAMN02402994
2330
GCA_000323225.1ContigADPA00000000SAMN02402996
2506
GCA_000323245.1ContigADPB00000000SAMN02402997
2654
GCA_000323425.1ContigADPJ00000000SAMN02403005
42095
GCA_000323445.1ContigADPK00000000SAMN02403006
5
GCA_000323485.1ContigADPM00000000SAMN02403008
620024
GCA_000323465.1ContigADPL00000000SAMN02403007
5761
GCA_000323365.1ContigADPG00000000SAMN02403002
42013
GCA_000323345.1ContigADPF00000000SAMN02403001
351001
GCA_000323385.1ContigADPH00000000SAMN02403003
42082
GCA_000323405.1ContigADPI00000000SAMN02403004
42091
GCA_000323185.1ContigADOW00000000SAMN02402992
164
GCA_000320445.1ContigADOX00000000SAMN02402993
2
SRA Data Details
ParameterValue
Data volume, Gbases38
Data volume, Mbytes25540

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