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Accession: PRJNA279279 ID: 279279

bioreactor metagenome

Metagenomic analysis of thiocyanate and cyanide biodegrading microbial consortia Metagenome

Gold mining and other industrial activities make extensive use of cyanide (CN-) and produce large volumes of thiocyanate- (SCN-) contaminated wastewater that must be treated before reuse in mining processes. More...
AccessionPRJNA279279
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismbioreactor metagenome[Taxonomy ID: 1076179]
unclassified sequences; metagenomes; ecological metagenomes; bioreactor metagenome
PublicationsKantor RS et al., "Bioreactor microbial ecosystems for thiocyanate and cyanide degradation unravelled with genome-resolved metagenomics.", Environ Microbiol, 2015 Dec;17(12):4929-41
SubmissionRegistration date: 13-Sep-2016
Banfield Lab, University of California, Berkeley
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)31194
WGS master233
SRA Experiments19
Protein Sequences801474
Publications
PubMed1
Other datasets
BioSample300
Assembly233
Assembly details:
Assembly levelNumber of Assemblies
199
34
233
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_001725205.1ScaffoldMEFR00000000SAMN03652494
-
GCA_001724025.1ScaffoldMEDJ00000000SAMN03652429
-
GCA_001897435.1ScaffoldMKSV00000000SAMN05660538
59-55
GCA_001897915.1ScaffoldMKRM00000000SAMN05660503
65-7
GCA_001724055.1ContigMEDK00000000SAMN03652430
-
GCA_001724795.1ContigMEDM00000000SAMN03652432
-
GCA_001724785.1ContigMEDL00000000SAMN03652431
-
GCA_001897345.1ScaffoldMKSP00000000SAMN05660532
38-8
GCA_001897925.1ScaffoldMKRP00000000SAMN05660506
39-4
GCA_001897425.1ScaffoldMKSW00000000SAMN05660539
69-20
GCA_001898585.1ScaffoldMKUI00000000SAMN05660577
62-46
GCA_001897905.1ScaffoldMKRG00000000SAMN05660497
62-7
GCA_001897755.1ScaffoldMKUJ00000000SAMN05660578
64-13
GCA_001724035.1ContigMEDN00000000SAMN03652433
-
GCA_001897775.1ScaffoldMKUK00000000SAMN05660579
69-12
GCA_001897445.1ScaffoldMKSX00000000SAMN05660540
33-17
GCA_001898075.1ScaffoldMKSD00000000SAMN05660520
40-19
GCA_001897795.1ScaffoldMKUL00000000SAMN05660580
41-28
GCA_001897475.1ScaffoldMKSY00000000SAMN05660541
43-37
GCA_001898015.1ScaffoldMKRW00000000SAMN05660513
62-8
GCA_001896865.1ScaffoldMKRH00000000SAMN05660498
64-11
GCA_001896945.1ScaffoldMKRL00000000SAMN05660502
64-6
GCA_001897995.1ScaffoldMKRV00000000SAMN05660512
65-37
GCA_001896805.1ScaffoldMKRE00000000SAMN05660495
65-7
GCA_001897135.1ScaffoldMKSE00000000SAMN05660521
66-12
GCA_001724815.1ContigMEDO00000000SAMN03652434
-
GCA_001898035.1ScaffoldMKRX00000000SAMN05660514
55-13
GCA_001897505.1ScaffoldMKSZ00000000SAMN05660542
36-12
GCA_001897035.1ScaffoldMKRS00000000SAMN05660509
45-6
GCA_001897535.1ScaffoldMKTC00000000SAMN05660545
37-13
GCA_001897515.1ScaffoldMKTA00000000SAMN05660543
41-46
GCA_001897525.1ScaffoldMKTB00000000SAMN05660544
43-16
GCA_001897855.1ScaffoldMKUO00000000SAMN05660583
43-93
GCA_001897835.1ScaffoldMKUN00000000SAMN05660582
46-16
GCA_001897155.1ScaffoldMKSF00000000SAMN05660522
47-18
GCA_001898165.1ContigMKTD00000000SAMN05660546
43-41
GCA_001897595.1ScaffoldMKTE00000000SAMN05660547
44-10
GCA_001724075.1ContigMEDP00000000SAMN03652435
-
GCA_001724095.1ScaffoldMEDQ00000000SAMN03652436
-
GCA_001725665.1ScaffoldMEFS00000000SAMN03652495
-
GCA_001898115.1ScaffoldMKSQ00000000SAMN05660533
67-29
GCA_001897025.1ScaffoldMKRY00000000SAMN05660515
67-6
GCA_001897585.1ScaffoldMKTF00000000SAMN05660548
64-34
GCA_001898655.1ScaffoldMKUR00000000SAMN05660586
66-26
GCA_001897215.1ScaffoldMKSJ00000000SAMN05660526
66-5
GCA_001898625.1ScaffoldMKUP00000000SAMN05660584
67-32
GCA_001897615.1ScaffoldMKTG00000000SAMN05660549
68-10
GCA_001897845.1ScaffoldMKUS00000000SAMN05660587
68-12
GCA_001898665.1ScaffoldMKUT00000000SAMN05660588
68-20
GCA_001898645.1ScaffoldMKUQ00000000SAMN05660585
70-64
GCA_001898725.1ScaffoldMKUV00000000SAMN05660590
37-49
GCA_001898705.1ContigMKUU00000000SAMN05660589
38-128
GCA_001897745.1ScaffoldMKUH00000000SAMN05660576
66-26
GCA_001897825.1ScaffoldMKUM00000000SAMN05660581
36-38
GCA_001899175.1ScaffoldMKVH00000000SAMN05660602
59-99
GCA_001897305.1ContigMKSO00000000SAMN05660531
47-87
GCA_001897295.1ScaffoldMKSN00000000SAMN05660530
49-20
GCA_001896875.1ScaffoldMKRI00000000SAMN05660499
68-7
GCA_001898185.1ContigMKTI00000000SAMN05660551
73-145
GCA_001898175.1ScaffoldMKTH00000000SAMN05660550
73-92
GCA_001897185.1ScaffoldMKSG00000000SAMN05660523
32-24
GCA_001897225.1ScaffoldMKSK00000000SAMN05660527
38-26
GCA_001899005.1ScaffoldMKUW00000000SAMN05660591
44-23
GCA_001898225.1ScaffoldMKTJ00000000SAMN05660552
54-19
GCA_001898785.1ScaffoldMKVE00000000SAMN05660599
36-9
GCA_001898255.1ScaffoldMKTK00000000SAMN05660553
39-10
GCA_001724115.1ScaffoldMEDR00000000SAMN03652437
-
GCA_001897605.1ScaffoldMKTL00000000SAMN05660554
38-18
GCA_001896915.1ScaffoldMKRK00000000SAMN05660501
43-6
GCA_001725215.1ScaffoldMEFT00000000SAMN03652496
-
GCA_001725235.1ScaffoldMEFU00000000SAMN03652497
-
GCA_001724135.1ContigMEDS00000000SAMN03652438
-
GCA_001725255.1ContigMEFV00000000SAMN03652498
-
GCA_001724175.1ScaffoldMEDT00000000SAMN03652439
-
GCA_001898745.1ScaffoldMKUX00000000SAMN05660592
67-8
GCA_001899045.1ScaffoldMKUY00000000SAMN05660593
63-57
GCA_001899085.1ScaffoldMKVB00000000SAMN05660596
66-14
GCA_001899065.1ScaffoldMKUZ00000000SAMN05660594
66-22
GCA_001899075.1ScaffoldMKVA00000000SAMN05660595
67-54
GCA_001724185.1ScaffoldMEDU00000000SAMN03652440
-
GCA_001898145.1ScaffoldMKSR00000000SAMN05660534
50-39
GCA_001899125.1ScaffoldMKVC00000000SAMN05660597
37-18
GCA_001898735.1ScaffoldMKVD00000000SAMN05660598
56-7
GCA_001724215.1ScaffoldMEDW00000000SAMN03652442
-
GCA_001724195.1ScaffoldMEDV00000000SAMN03652441
-
GCA_001899145.1ScaffoldMKVF00000000SAMN05660600
40-80
GCA_001899155.1ScaffoldMKVG00000000SAMN05660601
38-13
GCA_001898245.1ScaffoldMKTM00000000SAMN05660555
40-81
GCA_001724245.1ScaffoldMEDX00000000SAMN03652443
-
GCA_001898235.1ScaffoldMKTN00000000SAMN05660556
39-13
GCA_001724275.1ScaffoldMEDZ00000000SAMN03652445
-
GCA_001725305.1ScaffoldMEFW00000000SAMN03652499
-
GCA_001897365.1ScaffoldMKSS00000000SAMN05660535
70-12
GCA_001724835.1ScaffoldMEEA00000000SAMN03652446
-
GCA_001724295.1ScaffoldMEEB00000000SAMN03652447
-
GCA_001724045.1ScaffoldMEDI00000000SAMN03652428
-
GCA_001725315.1ScaffoldMEFX00000000SAMN03652500
-
GCA_001724855.1ContigMEED00000000SAMN03652449
-
GCA_001724315.1ScaffoldMEEC00000000SAMN03652448
-
GCA_001897665.1ContigMKTO00000000SAMN05660557
39-23
GCA_001899505.1ScaffoldMKVI00000000SAMN05660603
40-6
GCA_001898805.1ScaffoldMKVJ00000000SAMN05660604
71-9
GCA_001725325.1ContigMEFY00000000SAMN03652501
-
GCA_001725645.1ContigMEFO00000000SAMN03652491
-
GCA_001725595.1ScaffoldMEGS00000000SAMN03652523
-
GCA_001725155.1ContigMEFP00000000SAMN03652492
-
GCA_001725175.1ScaffoldMEFQ00000000SAMN03652493
-
GCA_001899855.1ScaffoldMKWR00000000SAMN05660638
63-13
GCA_001899805.1ScaffoldMKWP00000000SAMN05660636
66-474
GCA_001899845.1ScaffoldMKWQ00000000SAMN05660637
69-70
GCA_001898825.1ContigMKVK00000000SAMN05660605
64-120
GCA_001897075.1ScaffoldMKRZ00000000SAMN05660516
61-13
GCA_001899205.1ScaffoldMKVL00000000SAMN05660606
65-26
GCA_001724345.1ScaffoldMEEE00000000SAMN03652451
-
GCA_001724355.1ScaffoldMEEF00000000SAMN03652452
-
GCA_001724885.1ScaffoldMEEG00000000SAMN03652453
-
GCA_001898325.1ScaffoldMKTR00000000SAMN05660560
67-17
GCA_001897945.1ScaffoldMKRT00000000SAMN05660510
69-10
GCA_001897985.1ScaffoldMKRU00000000SAMN05660511
69-7
GCA_001898315.1ScaffoldMKTQ00000000SAMN05660559
70-16
GCA_001897105.1ScaffoldMKSA00000000SAMN05660517
70-38
GCA_001897265.1ScaffoldMKSL00000000SAMN05660528
71-23
GCA_001898305.1ScaffoldMKTP00000000SAMN05660558
71-36
GCA_001724435.1ContigMEEL00000000SAMN03652458
-
GCA_001725685.1ScaffoldMEFZ00000000SAMN03652502
-
GCA_001724385.1ScaffoldMEEI00000000SAMN03652455
-
GCA_001724395.1ContigMEEJ00000000SAMN03652456
-
GCA_001724425.1ScaffoldMEEK00000000SAMN03652457
-
GCA_001724905.1ScaffoldMEEH00000000SAMN03652454
-
GCA_001725695.1ScaffoldMEGA00000000SAMN03652503
-
GCA_001898905.1ScaffoldMKVP00000000SAMN05660610
70-64
GCA_001898835.1ScaffoldMKVM00000000SAMN05660607
72-143
GCA_001898855.1ScaffoldMKVN00000000SAMN05660608
73-13
GCA_001898885.1ScaffoldMKVO00000000SAMN05660609
73-15
GCA_001898335.1ScaffoldMKTS00000000SAMN05660561
44-25
GCA_001899635.1ScaffoldMKVQ00000000SAMN05660611
68-20
GCA_001724455.1ScaffoldMEEM00000000SAMN03652461
-
GCA_001724485.1ScaffoldMEEN00000000SAMN03652462
-
GCA_001896955.1ScaffoldMKRN00000000SAMN05660504
62-13
GCA_001897285.1ScaffoldMKSM00000000SAMN05660529
62-23
GCA_001724915.1ScaffoldMEEO00000000SAMN03652463
-
GCA_001899235.1ScaffoldMKVR00000000SAMN05660612
56-18
GCA_001724505.1ScaffoldMEEP00000000SAMN03652464
-
GCA_001898925.1ScaffoldMKVS00000000SAMN05660613
63-713
GCA_001725345.1ScaffoldMEGC00000000SAMN03652505
-
GCA_001725355.1ScaffoldMEGD00000000SAMN03652506
-
GCA_001898935.1ContigMKVT00000000SAMN05660614
47-17
GCA_001724935.1ScaffoldMEER00000000SAMN03652467
-
GCA_001725755.1ScaffoldMEGE00000000SAMN03652508
-
GCA_001899225.1ScaffoldMKVU00000000SAMN05660615
64-18
GCA_001724535.1ContigMEES00000000SAMN03652468
-
GCA_001724555.1ContigMEET00000000SAMN03652469
-
GCA_001725405.1ScaffoldMEGG00000000SAMN03652510
-
GCA_001724575.1ContigMEEU00000000SAMN03652470
-
GCA_001724955.1ScaffoldMEEV00000000SAMN03652471
-
GCA_001725395.1ScaffoldMEGF00000000SAMN03652509
-
GCA_001724985.1ScaffoldMEEW00000000SAMN03652472
-
GCA_001724605.1ContigMEEX00000000SAMN03652473
-
GCA_001898385.1ScaffoldMKTT00000000SAMN05660562
71-10
GCA_001724615.1ScaffoldMEEY00000000SAMN03652474
-
GCA_001899645.1ScaffoldMKVV00000000SAMN05660616
73-21
GCA_001725125.1ScaffoldMEEZ00000000SAMN03652475
-
GCA_001724645.1ContigMEFA00000000SAMN03652476
-
GCA_001725415.1ScaffoldMEGH00000000SAMN03652511
-
GCA_001724265.1ScaffoldMEDY00000000SAMN03652444
-
GCA_001898965.1ScaffoldMKVW00000000SAMN05660617
62-17
GCA_001899255.1ScaffoldMKVX00000000SAMN05660618
62-47
GCA_001898995.1ScaffoldMKVZ00000000SAMN05660620
63-22
GCA_001897115.1ScaffoldMKSB00000000SAMN05660518
63-7
GCA_001899285.1ScaffoldMKWA00000000SAMN05660621
64-17
GCA_001896885.1ScaffoldMKRJ00000000SAMN05660500
65-79
GCA_001899525.1ScaffoldMKVY00000000SAMN05660619
65-9
GCA_001897005.1ScaffoldMKRQ00000000SAMN05660507
68-8
GCA_001899545.1ScaffoldMKWB00000000SAMN05660622
60-20
GCA_001896825.1ScaffoldMKRF00000000SAMN05660496
63-7
GCA_001898415.1ScaffoldMKTU00000000SAMN05660563
67-28
GCA_001899565.1ScaffoldMKWC00000000SAMN05660623
68-29
GCA_001725445.1ContigMEGI00000000SAMN03652512
-
GCA_001725765.1ScaffoldMEGK00000000SAMN03652514
-
GCA_001724655.1ContigMEFB00000000SAMN03652477
-
GCA_001725485.1ScaffoldMEGL00000000SAMN03652515
-
GCA_001725465.1ScaffoldMEGJ00000000SAMN03652513
-
GCA_001898985.1ScaffoldMKWD00000000SAMN05660624
65-51
GCA_001898425.1ScaffoldMKTV00000000SAMN05660564
69-11
GCA_001899585.1ScaffoldMKWE00000000SAMN05660625
70-18
GCA_001724675.1ScaffoldMEFC00000000SAMN03652478
-
GCA_001725505.1ScaffoldMEGM00000000SAMN03652516
-
GCA_001724995.1ContigMEFD00000000SAMN03652479
-
GCA_001898065.1ScaffoldMKSC00000000SAMN05660519
65-6
GCA_001897355.1ScaffoldMKST00000000SAMN05660536
67-14
GCA_001898095.1ScaffoldMKSH00000000SAMN05660524
70-9
GCA_001898465.1ScaffoldMKTX00000000SAMN05660566
39-19
GCA_001899605.1ScaffoldMKWF00000000SAMN05660626
40-81
GCA_001896965.1ScaffoldMKRO00000000SAMN05660505
41-5
GCA_001899685.1ScaffoldMKWG00000000SAMN05660627
44-15
GCA_001898405.1ScaffoldMKTW00000000SAMN05660565
44-61
GCA_001898485.1ContigMKTY00000000SAMN05660567
46-32
GCA_001898495.1ScaffoldMKUA00000000SAMN05660569
48-107
GCA_001898505.1ScaffoldMKTZ00000000SAMN05660568
50-39
GCA_001724695.1ScaffoldMEFE00000000SAMN03652480
-
GCA_001899705.1ScaffoldMKWH00000000SAMN05660628
40-24
GCA_001899715.1ScaffoldMKWI00000000SAMN05660629
66-54
GCA_001725025.1ScaffoldMEFF00000000SAMN03652481
-
GCA_001898545.1ScaffoldMKUB00000000SAMN05660570
63-6
GCA_001897045.1ScaffoldMKRR00000000SAMN05660508
66-10
GCA_001897375.1ScaffoldMKSU00000000SAMN05660537
67-36
GCA_001899725.1ScaffoldMKWJ00000000SAMN05660630
67-41
GCA_001724715.1ScaffoldMEFG00000000SAMN03652482
-
GCA_001898555.1ScaffoldMKUC00000000SAMN05660571
65-8
GCA_001725095.1ScaffoldMEFH00000000SAMN03652483
-
GCA_001898575.1ScaffoldMKUD00000000SAMN05660572
48-14
GCA_001899865.1ScaffoldMKWK00000000SAMN05660631
69-14
GCA_001899305.1ScaffoldMKWL00000000SAMN05660632
0-1251
GCA_001899765.1ScaffoldMKWM00000000SAMN05660633
63-78
GCA_001897675.1ScaffoldMKUE00000000SAMN05660573
65-1059
GCA_001897685.1ScaffoldMKUG00000000SAMN05660575
65-1402
GCA_001899775.1ScaffoldMKWN00000000SAMN05660634
65-29
GCA_001897705.1ScaffoldMKUF00000000SAMN05660574
65-69
GCA_001725615.1ContigMEFL00000000SAMN03652488
-
GCA_001724735.1ScaffoldMEFI00000000SAMN03652484
-
GCA_001725135.1ContigMEFK00000000SAMN03652487
-
GCA_001725555.1ScaffoldMEGP00000000SAMN03652519
-
GCA_001725535.1ScaffoldMEGO00000000SAMN03652518
-
GCA_001724775.1ContigMEFJ00000000SAMN03652486
-
GCA_001725525.1ScaffoldMEGN00000000SAMN03652517
-
GCA_001725585.1ScaffoldMEGQ00000000SAMN03652520
-
GCA_001899795.1ScaffoldMKWO00000000SAMN05660635
67-131
GCA_001725775.1ScaffoldMEGR00000000SAMN03652521
-
GCA_001725035.1ContigMEFM00000000SAMN03652489
-
GCA_001897195.1ScaffoldMKSI00000000SAMN05660525
61-8
GCA_001725055.1ScaffoldMEFN00000000SAMN03652490
-
GCA_001725715.1ScaffoldMEGB00000000SAMN03652504
-
GCA_001724515.1ScaffoldMEEQ00000000SAMN03652465
-
SRA Data Details
ParameterValue
Data volume, Gbases339
Data volume, Tbytes0.22

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