Vibrio parahaemolyticus (ID 263814) - BioProject

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Accession: PRJNA263814 ID: 263814

Vibrio parahaemolyticus

Northeast New England Vibrio parahaemolyticus Genome sequencing

See Genome Information for Vibrio parahaemolyticus

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To study population structure of Vibrio parahaemolyticus in Northeast New England regions

Accession	PRJNA263814
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Vibrio parahaemolyticus[Taxonomy ID: 670] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio parahaemolyticus
Publications (total 3) Less...	Xu F et al., "Parallel Evolution of Two Clades of an Atlantic-Endemic Pathogenic Lineage of Vibrio parahaemolyticus by Independent Acquisition of Related Pathogenicity Islands.", Appl Environ Microbiol, 2017 Sep 15;83(18) More... Xu F et al., "Parallel Evolution of Two Clades of an Atlantic-Endemic Pathogenic Lineage of Vibrio parahaemolyticus by Independent Acquisition of Related Pathogenicity Islands.", Appl Environ Microbiol, 2017 Sep 15;83(18) Whistler CA et al., "Use of Whole-Genome Phylogeny and Comparisons for Development of a Multiplex PCR Assay To Identify Sequence Type 36 Vibrio parahaemolyticus.", J Clin Microbiol, 2015 Jun;53(6):1864-72 Xu F et al., "Genetic characterization of clinical and environmental Vibrio parahaemolyticus from the Northeast USA reveals emerging resident and non-indigenous pathogen lineages.", Front Microbiol, 2015;6:272 Less...
Submission	Registration date: 14-May-2015 University of New Hampshire
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	8663
WGS master	39
Genomic DNA	4
SRA Experiments	65
Protein Sequences	182262
Publications
PubMed	3
PMC	3
Other datasets
BioSample	82
Assembly	41

Assembly details:

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Assembly level

Number of Assemblies

2
5
34
41

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_002807115.1	NMPQ00000000		SAMN07291586	MAVP398	Vibrio parahaemolyticus
GCA_002238235.1	NJAN00000000		SAMN06917281	MAVP-25	Vibrio parahaemolyticus
GCA_002209785.1	MDWZ00000000		SAMN05578018	MAVP75	Vibrio parahaemolyticus
GCA_002209775.1	MDWY00000000		SAMN05578017	MAVP74	Vibrio parahaemolyticus
GCA_002209765.1	MDWW00000000		SAMN05578014	MAVP30	Vibrio parahaemolyticus
GCA_002209735.1	MDWX00000000		SAMN05578016	MAVP56	Vibrio parahaemolyticus
GCA_002209665.1	MDWS00000000		SAMN05578010	MAVP-L	Vibrio parahaemolyticus
GCA_002209685.1	MDWV00000000		SAMN05578015	MAVP39	Vibrio parahaemolyticus
GCA_002209675.1	MDWU00000000		SAMN05578013	MAVP4	Vibrio parahaemolyticus
GCA_002209625.1	MDWR00000000		SAMN05578012	MAVP-T	Vibrio parahaemolyticus
GCA_002209605.1	MDWQ00000000		SAMN05578011	MAVP-P	Vibrio parahaemolyticus
GCA_002209595.1	MDWP00000000		SAMN05578009	MAVP-A	Vibrio parahaemolyticus
GCA_002210265.1	MDXA00000000		SAMN05578019	MAVP78	Vibrio parahaemolyticus
GCA_002221425.1	NIXW00000000		SAMN06917276	MAVP-99	Vibrio parahaemolyticus
GCA_002221395.1	NJHM00000000		SAMN05713797	CTVP27C	Vibrio parahaemolyticus
GCA_002221385.1	NJHL00000000		SAMN05713798	CTVP31C	Vibrio parahaemolyticus
GCA_002221095.1	NIXT00000000		SAMN06917280	MAVP-3	Vibrio parahaemolyticus
GCA_002221365.1	NJHK00000000		SAMN05713799	CTVP34C	Vibrio parahaemolyticus
GCA_002221345.1	NJHJ00000000		SAMN05713800	MEVP12	Vibrio parahaemolyticus
GCA_002221325.1	NJHI00000000		SAMN05713801	MEVP14	Vibrio parahaemolyticus
GCA_002221305.1	NIXZ00000000		SAMN06917272	MAVP-71	Vibrio parahaemolyticus
GCA_002221285.1	NIXX00000000		SAMN06917275	MAVP-67	Vibrio parahaemolyticus
GCA_002221265.1	NIXV00000000		SAMN06917278	MAVP-21	Vibrio parahaemolyticus
GCA_002221245.1	NIYO00000000		SAMN06917277	G3578	Vibrio parahaemolyticus
GCA_002221225.1	NIYP00000000		SAMN06917270	G4186	Vibrio parahaemolyticus
GCA_002221165.1	NJAP00000000		SAMN06917271	MAVP-14	Vibrio parahaemolyticus
GCA_002221175.1	NJAO00000000		SAMN06917273	MAVP-46	Vibrio parahaemolyticus
GCA_002221185.1	NIXY00000000		SAMN06917274	MAVP-50	Vibrio parahaemolyticus
GCA_002221145.1	NIXU00000000		SAMN06917279	CTVP43C	Vibrio parahaemolyticus
GCA_002221075.1	NIXR00000000		SAMN06917283	MAVP-G	Vibrio parahaemolyticus
GCA_002221085.1	NIXS00000000		SAMN06917282	CTVP35C	Vibrio parahaemolyticus
GCA_002221065.1	NIXQ00000000		SAMN06917284	MAVP-108	Vibrio parahaemolyticus
GCA_002209725.2		2	SAMN05579852	MAVP-Q	Vibrio parahaemolyticus
GCA_001007545.1	LBHO00000000		SAMN03177809	MAVP-V	Vibrio parahaemolyticus
GCA_001007535.1	LBHN00000000		SAMN03177810	MAVP-45	Vibrio parahaemolyticus
GCA_001007525.1	LBHP00000000		SAMN03107386	MAVP-E	Vibrio parahaemolyticus
GCA_001023155.1	LBHG00000000		SAMN03177808	MAVP-M	Vibrio parahaemolyticus
GCA_001023125.1	LBHF00000000		SAMN03177811	CT4287	Vibrio parahaemolyticus
GCA_001023105.1	LBHE00000000		SAMN03107385	MAVP-36	Vibrio parahaemolyticus
GCA_001023055.1	LBHD00000000		SAMN03107383	MAVP-26	Vibrio parahaemolyticus
GCA_002290245.2		2	SAMN03107383	MAVP-26	Vibrio parahaemolyticus

SRA Data Details

Parameter	Value
Data volume, Gbases	45
Data volume, Mbytes	21405

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Vibrio parahaemolyticus

Northeast New England Vibrio parahaemolyticus Genome sequencing

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