Global_Pneumococcal_Sequencing__GPS__study_I (ID 252777) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from Protein

Accession: PRJEB3084 ID: 252777

Global_Pneumococcal_SequencingGPSstudy_I

http://www.sanger.ac.uk/resources/downloads/bacteria/streptococcus-pneumoniae. More...

Accession	PRJEB3084
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	du Plessis M et al., "Phylogenetic Analysis of Invasive Serotype 1 Pneumococcus in South Africa, 1989 to 2013.", J Clin Microbiol, 2016 May;54(5):1326-34 Metcalf BJ et al., "Strain features and distributions in pneumococci from children with invasive disease before and after 13-valent conjugate vaccine implementation in the USA.", Clin Microbiol Infect, 2016 Jan;22(1):60.e9-60.e29
Submission	Registration date: 15-Jun-2014 Wellcome Sanger Institute

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	560781
WGS master	13631
SRA Experiments	45065
Protein Sequences	28411247
Publications
PubMed	2
PMC	2
Other datasets
BioSample	45049
Assembly	13532

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

111
23
134

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_907169865.1	CAJRSS000000000	SAMEA4387860	-	Streptococcus pneumoniae
GCA_907169255.1	CAJRQK000000000	SAMEA2145065	-	Streptococcus pneumoniae
GCA_900049015.2	FHKN00000000	SAMEA2335992	GPSC27	Streptococcus pneumoniae
GCA_901226385.1	CAAMPG000000000	SAMEA2553990	GPSC37	Streptococcus pneumoniae
GCA_900052965.2	FHKJ00000000	SAMEA2335989	GPSC27	Streptococcus pneumoniae
GCA_901225265.1	CAAMLE000000000	SAMEA3207252	GPSC258	Streptococcus pneumoniae
GCA_901225345.1	CAAMLI000000000	SAMEA3232454	GPSC282	Streptococcus pneumoniae
GCA_901252685.1	CAAQMQ000000000	SAMEA3353269	GPSC34	Streptococcus pneumoniae
GCA_901252105.1	CAAQKL000000000	SAMEA2814178	GPSC2	Streptococcus pneumoniae
GCA_901220985.1	CAALUZ000000000	SAMEA2658704	GPSC37	Streptococcus pneumoniae
GCA_900049515.2	FHOR00000000	SAMEA2467770	GPSC97	Streptococcus pneumoniae
GCA_901312445.1	CAAZHE000000000	SAMEA4388060	GPSC3	Streptococcus pneumoniae
GCA_901220135.1	CAALRG000000000	SAMEA3309693	GPSC40	Streptococcus pneumoniae
GCA_901325665.1	CABBFM000000000	SAMEA3207004	GPSC276	Streptococcus pneumoniae
GCA_901333135.1	CABCID000000000	SAMEA3172974	GPSC112	Streptococcus pneumoniae
GCA_901258745.1	CAARJV000000000	SAMEA2147814	GPSC8	Streptococcus pneumoniae
GCA_901292315.1	CAAWIL000000000	SAMEA104035155	GPSC85	Streptococcus pneumoniae
GCA_901237355.1	CAAOFS000000000	SAMEA2658344	GPSC41	Streptococcus pneumoniae
GCA_901233865.1	CAANSE000000000	SAMEA3233383	GPSC80	Streptococcus pneumoniae
GCA_901233375.1	CAANQH000000000	SAMEA3233378	GPSC117	Streptococcus pneumoniae
GCA_901233225.1	CAANPF000000000	SAMEA3233377	GPSC80	Streptococcus pneumoniae
GCA_901222835.1	CAAMBU000000000	SAMEA3233285	GPSC81	Streptococcus pneumoniae
GCA_901321895.1	CABARF000000000	SAMEA3281711	GPSC16	Streptococcus pneumoniae
GCA_901237615.1	CAAOGR000000000	SAMEA3233409	GPSC103	Streptococcus pneumoniae
GCA_901237085.1	CAAOEO000000000	SAMEA3233407	GPSC94	Streptococcus pneumoniae
GCA_901235235.1	CAANXH000000000	SAMEA3233400	GPSC103	Streptococcus pneumoniae
GCA_901222705.1	CAAMBB000000000	SAMEA3233284	GPSC71	Streptococcus pneumoniae
GCA_901232595.1	CAANNH000000000	SAMEA3233270	GPSC62	Streptococcus pneumoniae
GCA_901310645.1	CAAZAI000000000	SAMEA3233266	GPSC62	Streptococcus pneumoniae
GCA_901310505.1	CAAYZR000000000	SAMEA3233265	GPSC117	Streptococcus pneumoniae
GCA_901310395.1	CAAYZL000000000	SAMEA3233262	GPSC221	Streptococcus pneumoniae
GCA_901310105.1	CAAYYF000000000	SAMEA3233258	GPSC62	Streptococcus pneumoniae
GCA_901309935.1	CAAYXT000000000	SAMEA3233254	GPSC71	Streptococcus pneumoniae
GCA_901309975.1	CAAYXO000000000	SAMEA3233253	GPSC62	Streptococcus pneumoniae
GCA_901309715.1	CAAYWU000000000	SAMEA3233250	GPSC62	Streptococcus pneumoniae
GCA_901232575.1	CAANMX000000000	SAMEA3233246	GPSC62	Streptococcus pneumoniae
GCA_901309435.1	CAAYVU000000000	SAMEA3233242	GPSC117	Streptococcus pneumoniae
GCA_901309205.1	CAAYUW000000000	SAMEA3233239	GPSC94	Streptococcus pneumoniae
GCA_901308995.1	CAAYUB000000000	SAMEA3233237	GPSC53	Streptococcus pneumoniae
GCA_901308955.1	CAAYUC000000000	SAMEA3233236	GPSC121	Streptococcus pneumoniae
GCA_901310525.1	CAAYZS000000000	SAMEA2658736	GPSC1	Streptococcus pneumoniae
GCA_901278555.1	CAAUII000000000	SAMEA2554311	GPSC14	Streptococcus pneumoniae
GCA_901272605.1	CAATLE000000000	SAMEA2341640	GPSC13	Streptococcus pneumoniae
GCA_901258545.1	CAARJF000000000	SAMEA2298335	GPSC14	Streptococcus pneumoniae
GCA_907169955.1	CAJRTF000000000	SAMEA3466758	-	Streptococcus pneumoniae
GCA_907169895.1	CAJRSV000000000	SAMEA3466734	-	Streptococcus pneumoniae
GCA_907169875.1	CAJRSX000000000	SAMEA2055397	-	Streptococcus pneumoniae
GCA_907169905.1	CAJRSU000000000	SAMEA3175661	-	Streptococcus pneumoniae
GCA_907169835.1	CAJRSN000000000	SAMEA4388308	-	Streptococcus pneumoniae
GCA_907169855.1	CAJRSL000000000	SAMEA2335835	-	Streptococcus pneumoniae
GCA_907169885.1	CAJRSW000000000	SAMEA3181820	-	Streptococcus pneumoniae
GCA_907169965.1	CAJRTD000000000	SAMEA2055548	-	Streptococcus pneumoniae
GCA_907172365.1	CAJSCJ000000000	SAMEA4387872	-	Streptococcus pneumoniae
GCA_907172355.1	CAJSCH000000000	SAMEA4388168	-	Streptococcus pneumoniae
GCA_907172345.1	CAJSCI000000000	SAMEA4388172	-	Streptococcus pneumoniae
GCA_907172335.1	CAJSCG000000000	SAMEA3486825	-	Streptococcus pneumoniae
GCA_907172325.1	CAJSCE000000000	SAMEA2055688	-	Streptococcus pneumoniae
GCA_907172315.1	CAJSCF000000000	SAMEA3181859	-	Streptococcus pneumoniae
GCA_907172285.1	CAJSCB000000000	SAMEA2057608	-	Streptococcus pneumoniae
GCA_907172295.1	CAJSCC000000000	SAMEA3181732	-	Streptococcus pneumoniae
GCA_907172275.1	CAJSCD000000000	SAMEA104154767	-	Streptococcus pneumoniae
GCA_907172305.1	CAJSCA000000000	SAMEA3181804	-	Streptococcus pneumoniae
GCA_907172265.1	CAJSBT000000000	SAMEA2056642	-	Streptococcus pneumoniae
GCA_907172215.1	CAJSBS000000000	SAMEA2658888	GPS_ZA_1928	Streptococcus pneumoniae
GCA_907172185.1	CAJSBV000000000	SAMEA2434596	-	Streptococcus pneumoniae
GCA_907172195.1	CAJSBZ000000000	SAMEA4764200	-	Streptococcus pneumoniae
GCA_907172205.1	CAJSBU000000000	SAMEA2055547	-	Streptococcus pneumoniae
GCA_907172245.1	CAJSBY000000000	SAMEA3181744	-	Streptococcus pneumoniae
GCA_907172255.1	CAJSBW000000000	SAMEA3175947	-	Streptococcus pneumoniae
GCA_907172225.1	CAJSBX000000000	SAMEA2814542	-	Streptococcus pneumoniae
GCA_907169335.1	CAJRQO000000000	SAMEA2203972	-	Streptococcus pneumoniae
GCA_907169345.1	CAJRQT000000000	SAMEA2203979	-	Streptococcus pneumoniae
GCA_907169325.1	CAJRQQ000000000	SAMEA2203975	-	Streptococcus pneumoniae
GCA_907169305.1	CAJRQR000000000	SAMEA2203981	-	Streptococcus pneumoniae
GCA_907169315.1	CAJRQS000000000	SAMEA2203959	-	Streptococcus pneumoniae
GCA_907169355.1	CAJRQX000000000	SAMEA2056934	-	Streptococcus pneumoniae
GCA_907169395.1	CAJRQU000000000	SAMEA2162064	-	Streptococcus pneumoniae
GCA_907169375.1	CAJRQY000000000	SAMEA2056925	-	Streptococcus pneumoniae
GCA_907169365.1	CAJRQW000000000	SAMEA2151453	-	Streptococcus pneumoniae
GCA_907169385.1	CAJRQV000000000	SAMEA2152906	-	Streptococcus pneumoniae
GCA_907169415.1	CAJRRC000000000	SAMEA2057774	-	Streptococcus pneumoniae
GCA_907169405.1	CAJRRB000000000	SAMEA1964193	-	Streptococcus pneumoniae
GCA_907169435.1	CAJRRA000000000	SAMEA2057772	-	Streptococcus pneumoniae
GCA_907169455.1	CAJRRD000000000	SAMEA2057784	-	Streptococcus pneumoniae
GCA_907169425.1	CAJRQZ000000000	SAMEA2055550	-	Streptococcus pneumoniae
GCA_907169495.1	CAJRRG000000000	SAMEA3175656	-	Streptococcus pneumoniae
GCA_907169445.1	CAJRRE000000000	SAMEA3175649	-	Streptococcus pneumoniae
GCA_907169285.1	CAJRQN000000000	SAMEA2152496	-	Streptococcus pneumoniae
GCA_907169245.1	CAJRQJ000000000	SAMEA4388157	-	Streptococcus pneumoniae
GCA_907169295.1	CAJRQP000000000	SAMEA2153098	-	Streptococcus pneumoniae
GCA_907169275.1	CAJRQL000000000	SAMEA2161906	-	Streptococcus pneumoniae
GCA_907169705.1	CAJRSB000000000	SAMEA2055693	-	Streptococcus pneumoniae
GCA_907169665.1	CAJRRZ000000000	SAMEA2553922	-	Streptococcus pneumoniae
GCA_907169675.1	CAJRRY000000000	SAMEA3466753	-	Streptococcus pneumoniae
GCA_907169715.1	CAJRSF000000000	SAMEA2553794	-	Streptococcus pneumoniae
GCA_907169725.1	CAJRSC000000000	SAMEA3430845	-	Streptococcus pneumoniae
GCA_907169775.1	CAJRSI000000000	SAMEA3175930	-	Streptococcus pneumoniae
GCA_907169685.1	CAJRSA000000000	SAMEA3431272	-	Streptococcus pneumoniae
GCA_907169735.1	CAJRSD000000000	SAMEA2814318	-	Streptococcus pneumoniae
GCA_907169825.1	CAJRSO000000000	SAMEA2797194	-	Streptococcus pneumoniae
GCA_907169815.1	CAJRSQ000000000	SAMEA4387867	-	Streptococcus pneumoniae
GCA_907169845.1	CAJRSR000000000	SAMEA3431609	-	Streptococcus pneumoniae
GCA_907169805.1	CAJRSP000000000	SAMEA4388158	-	Streptococcus pneumoniae
GCA_907169795.1	CAJRSM000000000	SAMEA4388307	-	Streptococcus pneumoniae
GCA_907169755.1	CAJRSK000000000	SAMEA2814517	-	Streptococcus pneumoniae
GCA_907169745.1	CAJRSJ000000000	SAMEA4388446	-	Streptococcus pneumoniae
GCA_907169765.1	CAJRSH000000000	SAMEA2335743	-	Streptococcus pneumoniae
GCA_907169565.1	CAJRRM000000000	SAMEA3175667	-	Streptococcus pneumoniae
GCA_907169575.1	CAJRRL000000000	SAMEA2797182	-	Streptococcus pneumoniae
GCA_907169585.1	CAJRRN000000000	SAMEA3486809	-	Streptococcus pneumoniae
GCA_907169595.1	CAJRRP000000000	SAMEA3175848	-	Streptococcus pneumoniae
GCA_907169625.1	CAJRRV000000000	SAMEA3431327	-	Streptococcus pneumoniae
GCA_907169695.1	CAJRSE000000000	SAMEA3466742	-	Streptococcus pneumoniae
GCA_907169605.1	CAJRRX000000000	SAMEA3431341	-	Streptococcus pneumoniae
GCA_907169645.1	CAJRRT000000000	SAMEA3431364	-	Streptococcus pneumoniae
GCA_907169615.1	CAJRRW000000000	SAMEA3431252	-	Streptococcus pneumoniae
GCA_907169635.1	CAJRRU000000000	SAMEA2797190	-	Streptococcus pneumoniae
GCA_907169465.1	CAJRRF000000000	SAMEA2057082	-	Streptococcus pneumoniae
GCA_907169475.1	CAJRRJ000000000	SAMEA3175654	-	Streptococcus pneumoniae
GCA_907169485.1	CAJRRI000000000	SAMEA3175658	-	Streptococcus pneumoniae
GCA_907169505.1	CAJRRH000000000	SAMEA3175662	-	Streptococcus pneumoniae
GCA_907169535.1	CAJRRR000000000	SAMEA3486831	-	Streptococcus pneumoniae
GCA_907169555.1	CAJRRS000000000	SAMEA3486815	-	Streptococcus pneumoniae
GCA_907169545.1	CAJRRQ000000000	SAMEA3713853	-	Streptococcus pneumoniae
GCA_907169525.1	CAJRRO000000000	SAMEA2796990	-	Streptococcus pneumoniae
GCA_907169515.1	CAJRRK000000000	SAMEA3175652	-	Streptococcus pneumoniae
GCA_900051425.2	FHMO00000000	SAMEA2467560	GPSC19	Streptococcus pneumoniae
GCA_900058135.2	FHIF00000000	SAMEA2204013	GPSC1	Streptococcus pneumoniae
GCA_900052745.2	FHMK00000000	SAMEA2467549	GPSC36	Streptococcus pneumoniae
GCA_900060815.2	FHIH00000000	SAMEA2204011	GPSC1	Streptococcus pneumoniae
GCA_900057355.2	FHID00000000	SAMEA2204009	GPSC16	Streptococcus pneumoniae
GCA_900052715.2	FHHV00000000	SAMEA2204001	GPSC98	Streptococcus pneumoniae
GCA_900052695.2	FHHW00000000	SAMEA2203997	GPSC15	Streptococcus pneumoniae
GCA_900055665.2	FHHR00000000	SAMEA2203996	GPSC6	Streptococcus pneumoniae

SRA Data Details

Parameter	Value
Data volume, Gbases	18,578
Data volume, Tbytes	5.47

BioProject

Result Filters

Display Settings:

Send to:

Links from Protein

Global_Pneumococcal_SequencingGPSstudy_I

Supplemental Content

Related information

Recent activity