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Accession: PRJNA446072 ID: 446072

Vibrionaceae

Genomic characterization of a polymicrobial infection associated with a disease outbreak in Pacific white shrimp (Litopenaeus vannamei) Genome sequencing and assembly

Genomic characterization of a polymicrobial infection associated with a disease outbreak in Pacific white shrimp (Litopenaeus vannamei)

Accession	PRJNA446072
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Vibrionaceae[Taxonomy ID: 641] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae
Submission	Registration date: 6-Jun-2019 Texas A&M - Corpus Christi
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1093
WGS master	11
SRA Experiments	11
Protein Sequences	50219
Other datasets
BioSample	11
Assembly	11

Assembly details:

Assembly level

Number of Assemblies

Contig

11
11

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_006124915.1		PZOJ00000000	SAMN08810358	Hep-2b-22	Photobacterium damselae
GCA_006124835.1		PZOH00000000	SAMN08810065	Hep-2a-14	Photobacterium damselae
GCA_006124795.1		PZOI00000000	SAMN08810066	Hep-2a-16	Photobacterium damselae
GCA_006124875.1		PZOD00000000	SAMN08805477	Hep-1a-2	Vibrio alginolyticus
GCA_006124855.1		PZOC00000000	SAMN08810357	Hep-2b-20	Vibrio parahaemolyticus
GCA_006124955.1		PZOG00000000	SAMN08810063	Hep-2a-12	Vibrio parahaemolyticus
GCA_006125005.1		PZOF00000000	SAMN08810099	Hep-2b-19	Vibrio rotiferianus
GCA_006124975.1		PZOE00000000	SAMN08810093	Hep-2a-18	Vibrio rotiferianus
GCA_006124895.1		PZOA00000000	SAMN08805475	Hep-1a-1	Vibrio rotiferianus
GCA_006124885.1		PZOB00000000	SAMN08805478	Hep-1a-3	Vibrio rotiferianus
GCA_006124995.1		QEWN00000000	SAMN08810062	Hep-1b-8	Vibrio sp. Hep-1b-8

SRA Data Details

Parameter	Value
Data volume, Gbases	28
Data volume, Mbytes	12382

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LinkOut to external resources

GOLD: Gp0493761 [Genomes On Line Database]
GOLD: Gp0493761
Genomes On Line Database

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BioProject Links for Protein (Select 1678683874) (1)
BioProject
Vibrionaceae
Vibrionaceae
Genomic characterization of a polymicrobial infection associated with a disease outbreak in Pacific white shrimp (Litopenaeus vannamei) Genome sequencing and assembly

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