Escherichia coli (ID 560176) - BioProject

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Accession: PRJNA560176 ID: 560176

Escherichia coli

E. coli strains diversity in IBD patients and healthy individuals

See Genome Information for Escherichia coli

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E. coli genomes were sequenced for comparative analysis of E. coli strains from CD and healthy individuals to reveal possible genetic determinants that may explain their role in the disease development.

Accession	PRJNA560176
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 20-Aug-2019 Kazan Federal University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	16102
WGS master	85
Protein Sequences	311520
Other datasets
BioSample	103
Assembly	85

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

21
64
85

Assembly	WGS	BioSample	Infraspecies Id	Taxonomy
GCA_030662145.1	JAUUCA000000000	SAMN36783947	CD64_30	Escherichia coli
GCA_030662135.1	JAUUBY000000000	SAMN36783949	CD64_46	Escherichia coli
GCA_030662115.1	JAUUBZ000000000	SAMN36783948	CD64_37	Escherichia coli
GCA_017741735.1	JAGHPU000000000	SAMN17739474	17CTRL.020	Escherichia coli
GCA_017741715.1	JAGHPT000000000	SAMN17739473	17CD.001	Escherichia coli
GCA_017741695.1	JAGHPW000000000	SAMN17739476	193CD.030	Escherichia coli
GCA_017741665.1	JAGHPY000000000	SAMN17739478	196CD.007	Escherichia coli
GCA_017741655.1	JAGHPZ000000000	SAMN17739479	198CD.020	Escherichia coli
GCA_017741625.1	JAGHQA000000000	SAMN17739480	200CD.017	Escherichia coli
GCA_017741615.1	JAGHPX000000000	SAMN17739477	195CD.021	Escherichia coli
GCA_017741595.1	JAGHQC000000000	SAMN17739482	214CD.015	Escherichia coli
GCA_017741575.1	JAGHQD000000000	SAMN17739483	24CTRL.006	Escherichia coli
GCA_017741545.1	JAGHQF000000000	SAMN17739485	35CD.009	Escherichia coli
GCA_017741535.1	JAGHQB000000000	SAMN17739481	213CD.006	Escherichia coli
GCA_017741515.1	JAGHQE000000000	SAMN17739484	31CTRL.013	Escherichia coli
GCA_017741495.1	JAGHQG000000000	SAMN17739486	4CTRL.015	Escherichia coli
GCA_017741455.1	JAGHQI000000000	SAMN17739488	53CTRL.057	Escherichia coli
GCA_017741435.1	JAGHQK000000000	SAMN17739490	77CD.025	Escherichia coli
GCA_017741445.1	JAGHQJ000000000	SAMN17739489	57CD.010	Escherichia coli
GCA_017741415.1	JAGHQH000000000	SAMN17739487	52CTRL.005	Escherichia coli
GCA_017741755.1	JAGHPV000000000	SAMN17739475	18CTRL.045	Escherichia coli
GCA_008041715.1	VRXU00000000	SAMN12571337	1_25_1	Escherichia coli
GCA_008041775.1	VRYA00000000	SAMN12571331	1_18_1	Escherichia coli
GCA_008041845.1	VRYD00000000	SAMN12571328	1_14_1	Escherichia coli
GCA_008041785.1	VRYB00000000	SAMN12571330	1_14_2	Escherichia coli
GCA_008041855.1	VRYC00000000	SAMN12571329	1_14_12	Escherichia coli
GCA_008041745.1	VRXY00000000	SAMN12571333	1_2_1	Escherichia coli
GCA_008041755.1	VRXZ00000000	SAMN12571332	1_18_16	Escherichia coli
GCA_008041675.1	VRXQ00000000	SAMN12571341	1_34_10	Escherichia coli
GCA_008041685.1	VRXT00000000	SAMN12571338	1_25_11	Escherichia coli
GCA_008041575.1	VRXR00000000	SAMN12571340	1_25_14	Escherichia coli
GCA_008041665.1	VRXW00000000	SAMN12571335	1_20_2	Escherichia coli
GCA_008041545.1	VRXO00000000	SAMN12571343	1_37_1	Escherichia coli
GCA_008041615.1	VRXV00000000	SAMN12571336	1_24_1	Escherichia coli
GCA_008041565.1	VRXP00000000	SAMN12571342	1_34_12	Escherichia coli
GCA_008041655.1	VRXX00000000	SAMN12571334	1_20_1	Escherichia coli
GCA_008041585.1	VRXS00000000	SAMN12571339	1_25_13	Escherichia coli
GCA_008041485.1	VRXM00000000	SAMN12571345	1_39_12	Escherichia coli
GCA_008041535.1	VRXN00000000	SAMN12571344	1_39_1	Escherichia coli
GCA_008041335.1	VRXD00000000	SAMN12571354	1_45_11	Escherichia coli
GCA_008041435.1	VRXI00000000	SAMN12571349	1_4_5	Escherichia coli
GCA_008041445.1	VRXJ00000000	SAMN12571348	1_4_3	Escherichia coli
GCA_008041475.1	VRXL00000000	SAMN12571346	1_4_1	Escherichia coli
GCA_008041385.1	VRXG00000000	SAMN12571351	1_44_1	Escherichia coli
GCA_008041465.1	VRXK00000000	SAMN12571347	1_4_13	Escherichia coli
GCA_008041355.1	VRXF00000000	SAMN12571352	1_44_4	Escherichia coli
GCA_008041295.1	VRXC00000000	SAMN12571355	1_52_1	Escherichia coli
GCA_008041395.1	VRXH00000000	SAMN12571350	1_4_7	Escherichia coli
GCA_008041245.1	VRWZ00000000	SAMN12571358	1_6_19	Escherichia coli
GCA_008041305.1	VRXB00000000	SAMN12571356	1_52_13	Escherichia coli
GCA_008041345.1	VRXE00000000	SAMN12571353	1_45_1	Escherichia coli
GCA_008041225.1	VRWY00000000	SAMN12571359	1_6_9	Escherichia coli
GCA_008041205.1	VRWW00000000	SAMN12571361	27k_1	Escherichia coli
GCA_008041195.1	VRWX00000000	SAMN12571360	1_7_1	Escherichia coli
GCA_008041255.1	VRXA00000000	SAMN12571357	1_53_1	Escherichia coli
GCA_008041115.1	VRWU00000000	SAMN12571363	3_188_1	Escherichia coli
GCA_008041095.1	VRWR00000000	SAMN12571366	3_192_1	Escherichia coli
GCA_008041125.1	VRWT00000000	SAMN12571364	3_189_1	Escherichia coli
GCA_008041155.1	VRWV00000000	SAMN12571362	27k_9	Escherichia coli
GCA_008041055.1	VRWQ00000000	SAMN12571367	3_192_2	Escherichia coli
GCA_008041105.1	VRWS00000000	SAMN12571365	3_191_1	Escherichia coli
GCA_008041015.1	VRWN00000000	SAMN12571370	3_199_1	Escherichia coli
GCA_008040945.1	VRWK00000000	SAMN12571373	3_200_11	Escherichia coli
GCA_008041045.1	VRWO00000000	SAMN12571369	3_196_7	Escherichia coli
GCA_008041025.1	VRWP00000000	SAMN12571368	3_196_1	Escherichia coli
GCA_008040955.1	VRWL00000000	SAMN12571372	3_200_1	Escherichia coli
GCA_008040965.1	VRWM00000000	SAMN12571371	3_199_3	Escherichia coli
GCA_008040895.1	VRWI00000000	SAMN12571375	3_206_11	Escherichia coli
GCA_008040835.1	VRWF00000000	SAMN12571378	3_225_1	Escherichia coli
GCA_008040925.1	VRWJ00000000	SAMN12571374	3_206_1	Escherichia coli
GCA_008040885.1	VRWH00000000	SAMN12571376	3_214_1	Escherichia coli
GCA_008040825.1	VRWD00000000	SAMN12571380	3_225_4	Escherichia coli
GCA_008040865.1	VRWG00000000	SAMN12571377	3_214_2	Escherichia coli
GCA_008040785.1	VRWC00000000	SAMN12571381	3_57_1	Escherichia coli
GCA_008040725.1	VRWA00000000	SAMN12571384	36k_1	Escherichia coli
GCA_008040815.1	VRWE00000000	SAMN12571379	3_225_3	Escherichia coli
GCA_008040765.1	VRWB00000000	SAMN12571382	3_77_1	Escherichia coli
GCA_008040735.1	VRVZ00000000	SAMN12571385	36k_8	Escherichia coli
GCA_008064655.1	VSBS00000000	SAMN12571383	3_77_5	Escherichia coli
GCA_008040715.1	VRVY00000000	SAMN12571386	CD64_12	Escherichia coli
GCA_008040685.1	VRVX00000000	SAMN12571387	CD64_2	Escherichia coli
GCA_008040635.1	VRVU00000000	SAMN12571390	CD64_9	Escherichia coli
GCA_008040625.1	VRVV00000000	SAMN12571389	CD64_7	Escherichia coli
GCA_008040595.1	VRVT00000000	SAMN12571391	CD69_1	Escherichia coli
GCA_008040675.1	VRVW00000000	SAMN12571388	CD64_5	Escherichia coli

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Escherichia coli

E. coli strains diversity in IBD patients and healthy individuals

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