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Accession: PRJNA595552 ID: 595552

Environmental Aspergillus fumigatus

WGS sequencing of Aspergillus fumigatus isolated from farms in Germany. The goal of this project is to understand how the use of azole fungicides in agriculture impacts the ecology, population structure, and resistance status of Aspergillus fumigatus.
AccessionPRJNA595552
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications
  • Barber AE et al., "Aspergillus fumigatus pan-genome analysis identifies genetic variants associated with human infection.", Nat Microbiol, 2021 Dec;6(12):1526-1536
  • Barber AE et al., "Effects of Agricultural Fungicide Use on Aspergillus fumigatus Abundance, Antifungal Susceptibility, and Population Structure.", mBio, 2020 Nov 24;11(6)
Grants
  • "FINAR" (Grant ID 03ZZ0809A, Bundesministerium für Bildung und Forschung)
SubmissionRegistration date: 13-Dec-2019
Leibniz-HKI
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)35351
WGS master64
SRA Experiments64
Protein Sequences603644
Publications
PubMed2
PMC1
Other datasets
BioSample64
Assembly64
Assembly details:
Assembly levelNumber of Assemblies
Scaffold Scaffold
Contig Contig
Total
7
57
64
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_020499225.1ContigJAIBQN000000000SAMN13559183
C-1-69L-1
Aspergillus fumigatus
GCA_020499315.1ContigJAIBQQ000000000SAMN13559180
D-2-25L-3
Aspergillus fumigatus
GCA_020499265.1ContigJAIBQO000000000SAMN13559182
D-2-25L-2
Aspergillus fumigatus
GCA_020499195.1ContigJAIBQM000000000SAMN13559184
D-2-17L-1
Aspergillus fumigatus
GCA_020499255.1ContigJAIBQP000000000SAMN13559181
D-2-22s-1
Aspergillus fumigatus
GCA_020499185.1ContigJAIBQL000000000SAMN13559185
D-2-24s-1
Aspergillus fumigatus
GCA_020499125.1ContigJAIBQH000000000SAMN13559189
E-1-14-1
Aspergillus fumigatus
GCA_020499135.1ContigJAIBQJ000000000SAMN13559187
E-1-56s-1
Aspergillus fumigatus
GCA_020499155.1ContigJAIBQK000000000SAMN13559186
C-1-51s-1
Aspergillus fumigatus
GCA_020499075.1ContigJAIBQF000000000SAMN13559191
E-1-25-10
Aspergillus fumigatus
GCA_020499115.1ContigJAIBQG000000000SAMN13559190
E-1-7-1
Aspergillus fumigatus
GCA_020499035.1ContigJAIBQD000000000SAMN13559193
D-2-23L-5
Aspergillus fumigatus
GCA_020499005.1ContigJAIBQC000000000SAMN13559194
C-1-93L-3
Aspergillus fumigatus
GCA_020499045.1ContigJAIBQE000000000SAMN13559192
E-1-21-2
Aspergillus fumigatus
GCA_020498965.1ContigJAIBPZ000000000SAMN13559197
B-1-43-1
Aspergillus fumigatus
GCA_020499015.1ContigJAIBQB000000000SAMN13559195
E-1-75s-1
Aspergillus fumigatus
GCA_020498985.1ContigJAIBQA000000000SAMN13559196
E-1-70L-4
Aspergillus fumigatus
GCA_020498895.1ScaffoldJAIBPU000000000SAMN13559202
E-1-65L-2
Aspergillus fumigatus
GCA_020498885.1ContigJAIBPT000000000SAMN13559203
B-1-44-s
Aspergillus fumigatus
GCA_020498945.1ContigJAIBPY000000000SAMN13559198
E-1-70L-5
Aspergillus fumigatus
GCA_020498905.1ContigJAIBPX000000000SAMN13559199
E-1-74s-1
Aspergillus fumigatus
GCA_020498755.1ContigJAIBPP000000000SAMN13559207
E-1-75s-2
Aspergillus fumigatus
GCA_020498865.1ScaffoldJAIBPV000000000SAMN13559201
B-1-45-2
Aspergillus fumigatus
GCA_020498765.1ContigJAIBPQ000000000SAMN13559206
E-1-65L-4
Aspergillus fumigatus
GCA_020498815.1ScaffoldJAIBPS000000000SAMN13559204
D-2-47L-1
Aspergillus fumigatus
GCA_020498735.1ContigJAIBPN000000000SAMN13559209
B-1-26-5
Aspergillus fumigatus
GCA_020498805.1ContigJAIBPR000000000SAMN13559205
D-2-49L-5
Aspergillus fumigatus
GCA_020498745.1ContigJAIBPM000000000SAMN13559210
B-1-27-5
Aspergillus fumigatus
GCA_020498725.1ContigJAIBPO000000000SAMN13559208
D-2-28L-1
Aspergillus fumigatus
GCA_020498875.1ContigJAIBPW000000000SAMN13559200
B-1-45-5
Aspergillus fumigatus
GCA_020510485.1ContigJAIBQR000000000SAMN13559179
C-1-24L-2
Aspergillus fumigatus
GCA_020500025.1ContigJAIBRQ000000000SAMN13559154
B-1-69L-1
Aspergillus fumigatus
GCA_020499935.1ContigJAIBRM000000000SAMN13559158
B-1-68s-1
Aspergillus fumigatus
GCA_020499985.1ContigJAIBRO000000000SAMN13559156
B-1-63s-1
Aspergillus fumigatus
GCA_020500195.1ContigJAIBRX000000000SAMN13559147
D-2-2s-3
Aspergillus fumigatus
GCA_020500075.1ScaffoldJAIBRR000000000SAMN13559153
B-1-71L-1
Aspergillus fumigatus
GCA_020500165.1ContigJAIBRW000000000SAMN13559148
C-1-40s-1
Aspergillus fumigatus
GCA_020500065.1ContigJAIBRT000000000SAMN13559151
C-1-72s-2
Aspergillus fumigatus
GCA_020500115.1ContigJAIBRV000000000SAMN13559149
C-1-80s-1
Aspergillus fumigatus
GCA_020500105.1ContigJAIBRU000000000SAMN13559150
D-2-38L-1
Aspergillus fumigatus
GCA_020500085.1ContigJAIBRS000000000SAMN13559152
C-1-76s-1
Aspergillus fumigatus
GCA_020499995.1ScaffoldJAIBRP000000000SAMN13559155
B-1-70s-1
Aspergillus fumigatus
GCA_020499975.1ScaffoldJAIBRN000000000SAMN13559157
B-1-66s-1
Aspergillus fumigatus
GCA_020499885.1ContigJAIBRH000000000SAMN13559163
C-1-60L-1
Aspergillus fumigatus
GCA_020499915.1ContigJAIBRL000000000SAMN13559159
B-1-67L-1
Aspergillus fumigatus
GCA_020499905.1ContigJAIBRK000000000SAMN13559160
B-1-75L-1
Aspergillus fumigatus
GCA_020499645.1ContigJAIBRJ000000000SAMN13559161
D-2-43L-2
Aspergillus fumigatus
GCA_020499595.1ContigJAIBRF000000000SAMN13559165
D-2-35s-1
Aspergillus fumigatus
GCA_020499605.1ContigJAIBRI000000000SAMN13559162
D-2-39L-1
Aspergillus fumigatus
GCA_020499565.1ContigJAIBRD000000000SAMN13559167
B-1-32-1
Aspergillus fumigatus
GCA_020499575.1ContigJAIBRE000000000SAMN13559166
D-2-2s-2
Aspergillus fumigatus
GCA_020499585.1ContigJAIBRG000000000SAMN13559164
D-2-29s-1
Aspergillus fumigatus
GCA_020499245.1ContigJAIBQI000000000SAMN13559188
C-1-72L-1
Aspergillus fumigatus
GCA_020499495.1ContigJAIBRB000000000SAMN13559169
C-1-6s-3
Aspergillus fumigatus
GCA_020499505.1ContigJAIBRC000000000SAMN13559168
B-1-48-5
Aspergillus fumigatus
GCA_020499475.1ContigJAIBQZ000000000SAMN13559171
C-1-31L-1
Aspergillus fumigatus
GCA_020499485.1ContigJAIBRA000000000SAMN13559170
C-1-28L-2
Aspergillus fumigatus
GCA_020499455.1ContigJAIBQY000000000SAMN13559172
E-1-48-2
Aspergillus fumigatus
GCA_020499355.1ContigJAIBQU000000000SAMN13559176
C-1-6s-2
Aspergillus fumigatus
GCA_020499415.1ScaffoldJAIBQX000000000SAMN13559173
E-1-49-1
Aspergillus fumigatus
GCA_020499405.1ContigJAIBQW000000000SAMN13559174
E-1-33L-1
Aspergillus fumigatus
GCA_020499395.1ContigJAIBQV000000000SAMN13559175
E-1-35-1
Aspergillus fumigatus
GCA_020499335.1ContigJAIBQT000000000SAMN13559177
C-1-27s-1
Aspergillus fumigatus
GCA_020499325.1ContigJAIBQS000000000SAMN13559178
C-1-33L-1
Aspergillus fumigatus
SRA Data Details
ParameterValue
Data volume, Gbases124
Data volume, Mbytes54324

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