Phytophthora infestans strain:1306 (ID 868814) - BioProject

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Accession: PRJNA868814 ID: 868814

Phytophthora infestans strain:1306 (potato late blight agent)

Phytophthora infestans strain:1306 Genome sequencing and assembly

See Genome Information for Phytophthora infestans

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51 additional projects are related by organism.

The goal was to create an assembly of the potato/tomato pathogen Phytophthora infestans using long sequencing reads, linking libraries, an optical map, and a genetic linkage map. More...

Accession	PRJNA868814
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Organism	Phytophthora infestans[Taxonomy ID: 4787] Eukaryota; Sar; Stramenopiles; Oomycota; Peronosporales; Peronosporaceae; Phytophthora; Phytophthora infestans
Publications	Matson MEH et al., "Karyotype variation, spontaneous genome rearrangements affecting chemical insensitivity, and expression level polymorphisms in the plant pathogen Phytophthora infestans revealed using its first chromosome-scale assembly.", PLoS Pathog, 2022 Oct;18(10):e1010869
Submission	Registration date: 17-Nov-2022 University of California
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	326
WGS master	1
SRA Experiments	198
Protein Sequences	19980
Publications
PubMed	1
PMC	1
Other datasets
BioSample	182
Assembly	1

Assembly details:

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Assembly	Level	WGS	Chrs	BioSample	Taxonomy
GCA_026225685.1	Chromosome	JAOYOA000000000	15	SAMN30543006	Phytophthora infestans

SRA Data Details

Parameter	Value
Data volume, Gbases	803
Data volume, Tbytes	0.49

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Phytophthora infestans strain:1306 (potato late blight agent)

Phytophthora infestans strain:1306 Genome sequencing and assembly

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