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Links from SRA

Accession: PRJNA129393 ID: 129393

Escherichia coli O111:H8 str. CVM9602

Outbreak study

See Genome Information for Escherichia coli
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This project is a component of the Food and Drug Administration, Center for Food Safety and Applied Nutrition: FoodBorne Pathogen Research
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9180 additional projects are related by organism.
525 additional projects are components of the Food and Drug Administration, Center for Food Safety and Applied Nutrition: FoodBorne Pathogen Research.
Genome sequencing project
AccessionPRJNA129393
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli O111:H8 str. CVM9602[Taxonomy ID: 1165942]
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli; Escherichia coli O111:H8 str. CVM9602
PublicationsJu W et al., "Phylogenetic analysis of non-O157 Shiga toxin-producing Escherichia coli strains by whole-genome sequencing.", J Clin Microbiol, 2012 Dec;50(12):4123-7
SubmissionRegistration date: 9-Jul-2012
FDA
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)269
WGS master1
SRA Experiments1
Protein Sequences5085
Publications
PubMed1
PMC1
Other datasets
BioSample2
Assembly1
Assembly details:
SRA Data Details
ParameterValue
Data volume, Mbases141
Data volume, Mbytes322

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