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Organizing biological data
Escherichia coli
Transcriptional profile of UPEC grown in different media
RfaH counter-silences inhibition of transcript elongation by H-NS–StpA H-NS nucleoprotein filaments in pathogenic E. coli
YciR, a specific 3′-phosphodiesterases, plays a role in the pathogenesis of Uropathogenic Escherichia coli CFT073
1. Next Generation Sequencing Assessment of the Influence of Antibiotic Exposure on Bacterial Genome using a Hollow Fiber Culture System
Establishing the global binding profile of DsdC in UPEC and NMEC
UPEC and NMEC strains expressing chromosomally FLAG-tagged DsdC were cultured in minimal medium for 3 h, spiked with D-serine for 2 h or left untreated, before harvesting for ChIP-seq
Establishing the global regulatory role of DsdC in UPEC and NMEC
UPEC and NMEC wild type and ΔdsdC mutants were cultured in minimal medium for 3 h, spiked with D-serine for 2 h, before harvesting for RNA-seq. DsdA was expressed to overcome growth inhibitory effects of D-serine. EHEC was also included for comparison.
uropathogenic ecoli transcriptome
The impact of genetic diversity on gene essentiality within the E. coli species.
Widespread strain-specific distinctions in chromosomal binding dynamics of a highly conserved Escherichia coli transcription factor
Escherichia coli CFT073 isolate:199310
Escherichia coli CFT073 isolate:199310 Genome sequencing
Tailoring a global iron regulon to a uropathogen
Comparison of gene expression profiles of uropathogenic Escherichia coli CFT073 after prolonged exposure to subinhibitory concentrations of different biocides
Escherichia coli CFT073 isolate:PU_38
Escherichia coli CFT073 isolate:PU_38 Genome sequencing
A highly conserved bacterial D-serine uptake system links host metabolism and virulence
The Epigenomic Landscape of Prokaryotes
Escherichia coli CFT073
Genome wide binding sites of NsrR in uropathogenic E.coli CFT073
Nitrosative stress response in uropathogenic Escherichia coli (UPEC)
Escherichia coli global gene expression due ciprofloxacin challenge in laboratory medium and human serum
Escherichia coli global gene expression due ciprofloxacin challenge in human whole blood
Effects of Escherichia coli global gene expression due to microfluidic processing
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