MAG Ja_bin-4076 from assembly ERS4649287

Organism: uncultured Geobacteraceae bacterium
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfuromonadia; Geobacterales; Geobacteraceae; environmental samples

Attributes

collection date	2018-01-05/2018-01-06
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Sweden
investigation type	metagenome
isolation source	lake water
nitrite	0
project name	microbes in stratified freshwaters
sample name	Ja_bin-4076
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:07:45Z
External Id	SAMEA6954487
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:07:45Z
INSDC status	public
Submitter Id	Ja_bin-4076
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	70.97
completeness software	checkm
contamination score	0.0
geographic location (latitude)	not provided
geographic location (longitude)	not provided
gtdb_taxonomy	d__Bacteria;p__Desulfuromonadota;c__Desulfuromonadia;o__Geobacterales;f__Pelobacteraceae;g__UBA8499
metagenomic OTU	anoxic_mOTU_2097
metagenomic source	lake water metagenome
region	Jämtland
sample derived from	ERS4649287
sample owner	Gaetan Martin
scientific_name	uncultured Geobacteraceae bacterium
sequencing method	NovaSeq
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioSample