MAG E14_bin-2280 from assembly ERS4649282

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Result Filters

Organism: uncultured Geobacteraceae bacterium
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfuromonadia; Geobacterales; Geobacteraceae; environmental samples

Attributes

collection date	2014-08-05
broad-scale environmental context	lentic water body
local-scale environmental context	pond
environmental medium	water
geographic location	Canada
investigation type	metagenome
isolation source	pond
nitrite	0
project name	microbes in stratified freshwaters
sample name	E14_bin-2280
sulfate	0
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:07:46Z
External Id	SAMEA6954562
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:07:46Z
INSDC status	public
Submitter Id	E14_bin-2280
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	98.29
completeness software	checkm
contamination score	0.93
geographic location (latitude)	55.22680555555556
geographic location (longitude)	-77.69561111111112
gtdb_taxonomy	d__Bacteria;p__Desulfuromonadota;c__Desulfuromonadia;o__Geobacterales;f__Pelobacteraceae;g__UBA8499
metagenomic OTU	anoxic_mOTU_1346
metagenomic source	pond metagenome
region	Kuujjuarapik-Whapmagoostui
sample derived from	ERS4649282
sample owner	Sari Peura
scientific_name	uncultured Geobacteraceae bacterium
sequencing method	NovaSeq
site name	SAS2C
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water