MAG VK_bin-1852 from assembly ERS4649311

Organism: uncultured Geobacteraceae bacterium
cellular organisms; Bacteria; Thermodesulfobacteriota; Desulfuromonadia; Geobacterales; Geobacteraceae; environmental samples

Attributes

collection date	2015-08-10
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	VK_bin-1852
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:07:53Z
External Id	SAMEA6955080
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:07:53Z
INSDC status	public
Submitter Id	VK_bin-1852
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	98.06
completeness software	checkm
contamination score	4.46
geographic location (latitude)	61.242222222222225
geographic location (longitude)	25.063055555555557
gtdb_taxonomy	d__Bacteria;p__Desulfuromonadota;c__Desulfuromonadia;o__Geobacterales;f__Pelobacteraceae;g__UBA8499
metagenomic OTU	anoxic_mOTU_2682
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4649311
sample owner	Leyden Fernandez
scientific_name	uncultured Geobacteraceae bacterium
sequencing method	NovaSeq
site name	Valkea Kotinen
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water

BioSample