MAG LJ_bin-2263 from assembly ERS4649297

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Result Filters

Organism: uncultured Actinomycetes bacterium
cellular organisms; Bacteria; Terrabacteria group; Actinomycetota; Actinomycetes; environmental samples

Attributes

collection date	2015-09-15
broad-scale environmental context	lentic water body
local-scale environmental context	lake
environmental medium	water
geographic location	Finland
investigation type	metagenome
isolation source	lake water
project name	microbes in stratified freshwaters
sample name	LJ_bin-2263
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2020-06-15T17:03:32Z
ENA-LAST-UPDATE	2020-06-18T09:08:40Z
External Id	SAMEA6956836
INSDC center name	BILS
INSDC first public	2020-06-15T17:03:32Z
INSDC last update	2020-06-18T09:08:40Z
INSDC status	public
Submitter Id	LJ_bin-2263
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	megahit
binning parameters	min_len:1500,min_bin_size:10000,maxP:93,minS:50
binning software	metabat
collection data	metagenome
completeness score	42.03
completeness software	checkm
contamination score	0.85
geographic location (latitude)	61.07666666666667
geographic location (longitude)	25.032777777777778
gtdb_taxonomy	d__Bacteria;p__Actinobacteriota;c__Acidimicrobiia;o__Microtrichales;f__Ilumatobacteraceae
metagenomic OTU	anoxic_mOTU_1177
metagenomic source	lake water metagenome
region	Evo
sample derived from	ERS4649297
sample owner	Antti Rissanen
scientific_name	uncultured actinobacterium
sequencing method	NovaSeq
site name	Lovojärvi
taxonomic identity marker	gtdbtk followed by sourmash-lca, see publication
water environmental package	water