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Metagenome-assembled genome: SRR9109407_bin.13_metaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA110422320; SRA: ERS12520690
Organism
Chitinibacter tainanensis
cellular organisms; Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Chitinibacteraceae; Chitinibacter
Attributes
broad-scale environmental contextZebrafish digestive system
collection date2019-01-01
environmental mediumFeces
geographic locationChina
investigation typemetagenome-assembled genome
isolation sourcefish gut metagenome
project nameGut microbiome sequenced from the Zebrafish raised under antibiotic stress
sample nameSRR9109407_bin.13_metaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2022-07-27
ENA-LAST-UPDATE2022-07-27
External IdSAMEA110422320
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2022-07-27T13:00:08Z
INSDC last update2022-07-27T13:00:08Z
INSDC statuspublic
Submitter IdSRR9109407_bin.13_metaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaSPAdes v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwaremetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score98.29
completeness softwareCheckM
contamination score0.43
geographic location (latitude)31.2304
geographic location (longitude)121.4737
local environmental contextGut
metagenomic sourcefish gut metagenome
sample derived fromSAMN11812245
sequencing methodIllumina HiSeq 2500
taxonomic classificationThe taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Betaproteobacteria;o__Neisseriales;f__Chromobacteriaceae;g__Chitinibacter;s__Chitinibacter tainanensis
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR9109407 of study SRP199223.

BioProject
PRJEB54755
Retrieve all samples from this project

Submission
EBI; 2022-07-28
Accession:
SAMEA110422320
ID:
30017795

BioProject Nucleotide

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