Metagenome-assembled genome: extra-SRR6945394.2_16... - BioSample

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Result Filters

Organism: Helicobacter typhlonius
cellular organisms; Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Helicobacteraceae; Helicobacter

Attributes

broad-scale environmental context	mouse digestive system
collection date	2017-01-01
environmental medium	feces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	mouse gut metagenome Transcriptome or Gene expression
sample name	extra-SRR6945394.2_1677799457
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-03-06T00:25:05Z
ENA-LAST-UPDATE	2023-03-06T00:25:05Z
External Id	SAMEA112729040
INSDC center name	HELMHOLTZ CENTRE FOR INFECTION RESEARCH
INSDC first public	2023-03-06T00:25:05Z
INSDC last update	2023-03-06T00:25:05Z
INSDC status	public
Submitter Id	extra-SRR6945394.2_1677799457
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes
binning parameters	default
binning software	metabat2
completeness score	99.35
completeness software	CheckM
contamination score	1.23
geographic location (latitude)	39.2639
geographic location (longitude)	-72.0561
local environmental context	mouse gut
metagenomic source	mouse gut metagenome
sample derived from	SAMN08864412
scientific_name	Helicobacter typhlonius
sequencing method	Illumina HiSeq 2500
taxonomic identity marker	multi-marker approach

Description: This sample represents a Metagenome-assembled genome assembled from the metagenomic run SRR6945394 of study SRP137668.

BioProject: PRJEB32890 An integrated metagenome catalog reveals new insights into the murine gut microbiome
Retrieve all samples from this project