U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Metagenome-Assembled Genome: ERR10960943_bin.4_MetaWRAP_v1.3_MAG

Identifiers
BioSample: SAMEA114061544; SRA: ERS16045410
Organism
Veillonella magna
cellular organisms; Bacteria; Bacillati; Bacillota; Negativicutes; Veillonellales; Veillonellaceae; Veillonella
Attributes
broad-scale environmental contextHuman digestive system
collection date2018
environmental mediumfaeces
geographic locationKenya
investigation typemetagenome-assembled genome
isolation sourcehuman feces metagenome
project nameShotgun metagenomics from Kenyan infants
sample nameERR10960943_bin.4_MetaWRAP_v1.3_MAG
ENA-CHECKLISTERC000047
ENA-FIRST-PUBLIC2023-07-13T16:22:54Z
ENA-LAST-UPDATE2023-07-13T16:22:54Z
External IdSAMEA114061544
INSDC center aliasEMG
INSDC center nameEMG
INSDC first public2023-07-13T16:22:54Z
INSDC last update2023-07-13T16:22:54Z
INSDC statuspublic
Submitter IdERR10960943_bin.4_MetaWRAP_v1.3_MAG
assembly qualityMany fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly softwaremetaspades v3.15.3
binning parametersMaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning softwareMetaWRAP v1.3
broker nameEMG broker account, EMBL-EBI
completeness score97.7
completeness softwareCheckM
contamination score0.0
geographic location (latitude)-0.023636
geographic location (longitude)37.910405
local environmental contextcolon
metagenomic sourcehuman feces metagenome
sample derived fromSAMEA112710990
scientific_nameVeillonella magna
sequencing methodIllumina NovaSeq 6000
taxonomic classificationThe taxonomy of this Metagenome-Assembled Genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Firmicutes;c__Negativicutes;o__Veillonellales;f__Veillonellaceae;g__Veillonella;s__Veillonella magna
taxonomic identity markermulti-marker approach
Description

This sample represents a Third Party Annotation (TPA) metagenome-assembled genome assembled from the metagenomic run ERR10960943 of study ERP137488.

BioProject
PRJEB62839
Retrieve all samples from this project

Submission
EBI; 2023-07-17
Accession:
SAMEA114061544
ID:
36477637

BioProject Nucleotide

Supplemental Content

Related information

Recent activity

Clear Turn Off Turn On

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
You are here: NCBI > DNA & RNA > BioSample
Support Center