SCBS-CoV-2: wastewater surveillance

Identifiers: BioSample: SAMN41948129; Sample name: WA1001856; SRA: SRS21698820

Organism: wastewater metagenome
unclassified entries; unclassified sequences; metagenomes; ecological metagenomes

Attributes

collection date	2024-06-13
geographic location	USA: Washington
isolation source	wastewater
project name	CDC NWSS
collected by	Washington State Department of Health
purpose of wastewater sampling	public health surveillance community-level
wastewater sample site	wastewater treatment plant
wastewater flow	1.411
wastewater population	16150
wastewater sample matrix	raw wastewater
wastewater sample type	composite
wastewater sample duration	Not Collected
wastewater temperature	2
wastewater pH	Not Collected
wastewater industrial effluent percent	20
wastewater total suspended solids	Not Collected
wastewater pre-treatment	No
wastewater surveillance target 1	SCBS-CoV-2
wastewater surveillance target 1 known present	yes
wastewater surveillance target 1 protocol	Multiplex SARS-Flu-RSV-Mpox dPCR
wastewater surveillance target 1 concentration	5271000
wastewater surveillance target 1 conc unit	Copies/L
wastewater surveillance target 1 gene	N
wastewater surveillance target 2	Not applicable
purpose of wastewater sequencing	Community Surveillance
sequenced by	Washington State Department of Health
wastewater surveillance system sample ID	243274
collection_time	7:58:00 AM
collection_site_id	WA0022578
instantaneous_flow	See ww_flow
collection_volume	50 mL
concentration_method	Ceres Nanotrap
extraction_method	MagMAX Viral/Pathogen Nucleic Acid Isolation Kit
extraction_control	OC43 Recovery Control

BioProject: PRJNA907019 Wastewater metagenome
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BioSample