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CDC Sars CoV2 Sequencing Baseline Constellation

Identifiers
BioSample: SAMN43489342; SRA: SRS22541212; CDC-OAMD: SARS-CoV-2/Human/USA/PA-CDC-LC1116163/2024
Organism
Severe acute respiratory syndrome coronavirus 2
Viruses; Riboviria; Orthornavirae; Pisuviricota; Pisoniviricetes; Nidovirales; Cornidovirineae; Coronaviridae; Orthocoronavirinae; Betacoronavirus; Sarbecovirus; Severe acute respiratory syndrome-related coronavirus
Package
SARS-CoV-2: clinical or host-associated; version 1.0
Attributes
isolateSARS-CoV-2/Human/USA/PA-CDC-LC1116163/2024
collected byLaboratory Corporation of America
collection date2024-08-17
isolation sourceNasal Swabs
geographic locationUSA: Pennsylvania
hostHomo sapiens
host diseaseCOVID-19
host sexmale
host age27
collection deviceNasal Swabs
collection method Nasal Swabs
purpose of sequencingbaseline surveillance (random sampling)
host_raceUnknown
diagnostic_gene_name_1N1 gene
diagnostic_pcr_protocol_1Labcorp LDT
diagnostic_pcr_Ct_value_1Unknown
diagnostic_gene_name_2N2 gene
diagnostic_pcr_protocol_2Labcorp LDT
diagnostic_pcr_Ct_value_2Unknown
diagnostic_gene_name_3RP gene
diagnostic_pcr_protocol_3Labcorp LDT
diagnostic_pcr_Ct_value_3Unknown
lineage/clade nameKP.3.1.1
Submission
CDC-OAMD; 2024-09-04
Accession:
SAMN43489342
ID:
43489342

BioProject SRA

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