Metagenome-assembled genome: private_T1887_metawra... - BioSample

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Result Filters

Organism: uncultured Sphingomonas sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas; environmental samples

Attributes

broad-scale environmental context	Thallus of Lignoscripta atroalba lichen
collection date	2019-04-07
environmental medium	lichen thallus
geographic location	Canada
investigation type	metagenome-assembled genome
isolation source	lichen metagenome
project name	The genome sequences provided here are part of a study on the CAZyme arsenal of lichen fungal symbionts from the Lecanoromycetes in the context of other (previously published) fungi from other groups of the Ascomycota.
sample name	private_T1887_metawrap_bin.3
ENA first public	2024-09-19
ENA-CHECKLIST	ERC000047
INSDC center name	Spribille Lab
INSDC status	public
Submitter Id	private_T1887_metawrap_bin.3
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes_v3.13
binning parameters	default
binning software	metaWRAP_v.1.2
completeness score	96.53
completeness software	CheckM_v1.1.3
contamination score	1.18
geographic location (latitude)	53.33953500
geographic location (longitude)	-117.81972500
local environmental context	lichen thallus
metagenomic source	lichen metagenome
sample derived from	SAMN25961855
scientific_name	uncultured Sphingomonas sp.
sequencing method	Illumina HiSeq X
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from the metagenomic run SRR18162810 of study SRP361743.