MIGS Viral sample from Perhabdovirus perca

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Result Filters

Identifiers: BioSample: SAMN36346252; Sample name: Perch rhabdovirus 22/145

Organism: Perhabdovirus perca
Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Perhabdovirus

Package: MIGS: virus, food-animal and animal feed; version 6.0

Attributes

isolate	22/145
collection site geographic feature	fish tank
collection date	2022-07-01
broad-scale environmental context	fish farm
local-scale environmental context	water tank
environmental medium	spring water
food product origin geographic location	France
food production characteristics	industrial
food product type	fresh fish
geographic location	France
Interagency Food Safety Analytics Collaboration (IFSAC) category	meat
intended consumer	human as food consumer
isolation and growth condition	grinded organs
latitude and longitude	46.67164738 N 5.55417042 E
propagation	in vitro cell culture
purpose of sampling	active surveillance in response to outbreak
isolation source	tank
negative control type	water
positive control type	perch rhabdovirus
Fish perhabdovirus	no

Description

This is a report of a nearly full-length genome of a perhabdovirus isolated in 2022 on perch in a French farm. This virus is genetically related to virus 20/43, which was associated with an outbreak on perch in a farm in France in 2019. Both viruses represent a specific lineage of Perch rhabdovirus.

Keywords: GSC:MIxS;MIGS:6.0