Metagenome-assembled genome: SRR9109407_bin.14_met... - BioSample

Metagenome-assembled genome: SRR9109407_bin.14_metaWRAP_v1.3_MAG

Identifiers: BioSample: SAMEA110422321; SRA: ERS12520691

Organism: uncultured Rhizobium sp.
cellular organisms; Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium; environmental samples

Attributes

broad-scale environmental context	Zebrafish digestive system
collection date	2019-01-01
environmental medium	Feces
geographic location	China
investigation type	metagenome-assembled genome
isolation source	fish gut metagenome
project name	Gut microbiome sequenced from the Zebrafish raised under antibiotic stress
sample name	SRR9109407_bin.14_metaWRAP_v1.3_MAG
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2022-07-27
ENA-LAST-UPDATE	2022-07-27
External Id	SAMEA110422321
INSDC center alias	EMG
INSDC center name	EMG
INSDC first public	2022-07-27T13:00:08Z
INSDC last update	2022-07-27T13:00:08Z
INSDC status	public
Submitter Id	SRR9109407_bin.14_metaWRAP_v1.3_MAG
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSPAdes v3.15.3
binning parameters	MaxBin2, MetaBat2, Concoct with default parameter of the metaWRAP pipeline. Bin refinement module used from metaWRAP with default parameters.
binning software	metaWRAP v1.3
broker name	EMG broker account, EMBL-EBI
completeness score	95.2
completeness software	CheckM
contamination score	0.66
geographic location (latitude)	31.2304
geographic location (longitude)	121.4737
local environmental context	Gut
metagenomic source	fish gut metagenome
sample derived from	SAMN11812245
sequencing method	Illumina HiSeq 2500
taxonomic classification	The taxonomy of this metagenome-assembled genome was originally computed with GTDBtk, which assigned the following taxonomic annotation: d__Bacteria;p__Proteobacteria;c__Alphaproteobacteria;o__Rhizobiales;f__Rhizobiaceae;g__Rhizobium;s__
taxonomic identity marker	multi-marker approach

Description: This sample represents a Third Party Annotation (TPA) Metagenome-Assembled Genome (MAG) assembled from the metagenomic run SRR9109407 of study SRP199223.

BioProject: PRJEB54755
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Submission: EBI; 2022-07-28

Accession:: SAMEA110422321
ID:: 30017796

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Metagenome-assembled genome: SRR9109407_bin.14_metaWRAP_v1.3_MAG

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