Metagenome-assembled genome: MGG30774_1680015441

Organism: uncultured Alistipes sp.
cellular organisms; Bacteria; FCB group; Bacteroidota/Chlorobiota group; Bacteroidota; Bacteroidia; Bacteroidales; Rikenellaceae; Alistipes; environmental samples

Attributes

broad-scale environmental context	Host-associated
collection date	2016-06-06
environmental medium	Feces
geographic location	USA
investigation type	metagenome-assembled genome
isolation source	mouse gut metagenome
project name	This sample represents a Third Party Annotation (TPA) Metagenome-assembled genome assembled from themetagenomic runs ERR2560615,ERR2560616,ERR2560617 of study ERP108585.
sample name	MGG30774_1680015441
ENA-CHECKLIST	ERC000047
ENA-FIRST-PUBLIC	2023-04-23
ENA-LAST-UPDATE	2023-04-23
External Id	SAMEA112936715
INSDC center alias	UNIVERSITY OF GENEVA
INSDC center name	UNIVERSITY OF GENEVA
INSDC first public	2023-04-23T12:27:36Z
INSDC last update	2023-04-23T12:27:36Z
INSDC status	public
Submitter Id	MGG30774_1680015441
assembly quality	Many fragments with little to no review of assembly other than reporting of standard assembly statistics
assembly software	metaSpades_v3.13
binning parameters	default
binning software	metagenome_atlas_v2.3
completeness score	99.52
completeness software	checkM_v1.1
contamination score	0.0
geographic location (latitude)	74.0059
geographic location (longitude)	40.7128
local environmental context	Mouse digestive system
metagenomic source	mouse gut metagenome
sample derived from	SAMEA4643398
scientific_name	uncultured Alistipes sp.
sequencing method	Illumina HiSeq 4000
taxonomic identity marker	multi-marker approach

Description: This is a Third Party Annotation (TPA) bin derived from the primary whole genome shotgun (WGS) data set ERP108585. This sample represents a Metagenome-assembled genome from the metagenomic runs ERR2560615,ERR2560616,ERR2560617.

BioSample